Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3982 ATGGCTTTCTTTGGTAAACTTGGGAATATTCTACGACAAGGGGTAAACCGGAAGATTGTTTTGGAATTGCGTCCGGCCCCATCTGCTCTCCAGGCTATAAGATGCATGTGTTCTGCTCCAACCACAAAGCTGTTTATAGGGGGTGTTTCATATTCAACTGATGAAAATAGTTTGAGGGAAGCTTTTTCAAGATATGGTGAAGTTCTTGACGCAAGGATAATTATGGATCGTGAAACTGGTAGATCTAGAGGATTTGGCTTTATCACATTCAATTCAGTTGAGGAAGCATCTAGTGCCATTCAGGCCTTGGATGGTCAGGATCTTCATGGTCGTCGGGTTAGGGTAAATTACGCTAATGAAAGGCCTCGTGTATATGGCGGCGGCGGCGGTTCTTATGGTAATGCGTCATACGGTGGTGGAGCTGGGTATGCAGGTGCTTATGGTGGCTCTCCATACGGTGGTGCTTCAAGTGGCGGTGGAAATGTAGATGGAGGTTATGGGGGTGGTGGCTATGGTGGAGGTAGCTCTGGACCAGGTGCCAATTATGGGGGTAGTAACTATTCTGCTCCTAATAGTTTCGGAACTAGCAATGCTGGTAGCGGCATTGGCTCTGCTGGTGGATATGATGGAAGTGGGGGGATGGAATATGGCGGCCGTGCCCAATTTGATAGCAAAGACTGTGGTAATGTAAATGAGGACTTGGGAGGTGACGGAGACTCGATCCATGGAAATTTTAGCGATGGTGATGATGTTGAGGACTCGATCAATGGCAATGATGATACTGATGATTTTGCTAAAAGGGCCTGA 807 0.4709 MAFFGKLGNILRQGVNRKIVLELRPAPSALQAIRCMCSAPTTKLFIGGVSYSTDENSLREAFSRYGEVLDARIIMDRETGRSRGFGFITFNSVEEASSAIQALDGQDLHGRRVRVNYANERPRVYGGGGGSYGNASYGGGAGYAGAYGGSPYGGASSGGGNVDGGYGGGGYGGGSSGPGANYGGSNYSAPNSFGTSNAGSGIGSAGGYDGSGGMEYGGRAQFDSKDCGNVNEDLGGDGDSIHGNFSDGDDVEDSINGNDDTDDFAKRA* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3982 268 CDD RRM_HP0827_like 43 119 - -
Mtr4g3982 268 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 1 267 - -
Mtr4g3982 268 PRINTS Eggshell protein signature 38 54 - -
Mtr4g3982 268 PRINTS Eggshell protein signature 138 153 - -
Mtr4g3982 268 PRINTS Eggshell protein signature 166 176 - -
Mtr4g3982 268 PRINTS Eggshell protein signature 199 217 - -
Mtr4g3982 268 MobiDBLite consensus disorder prediction 219 268 - -
Mtr4g3982 268 Gene3D - 25 138 IPR012677 -
Mtr4g3982 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Mtr4g3982 268 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL 1 267 - -
Mtr4g3982 268 SUPERFAMILY RNA-binding domain, RBD 39 149 IPR035979 GO:0003676
Mtr4g3982 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Mtr4g3982 268 SMART rrm1_1 43 116 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3982 Mtr-Chr4 53563133 53566815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3982 42 130 Eukaryotic Initiation Factors Gene Family AT4G34110 33.708 8.66e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3982 K12741 - gmx:100782808 209.534