Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3979 ATGGCATCGACGGCGAAGCGATGCCACTACGAAGTTCTCGGTCTACCTCGCGAATGCTCACCAGAAGAACTCCGATCAGCTTACCGGAAACTCGCCCTCCAACGCCACCCCGACAAGCTCGTCAAATCAGGCCTCTCTCAATCCGAAGCCACCGCTCAATTTCAGGAGCTACAACACGCTTATGAGGTTCTCTCCGATCCAAAGGAACGAGCTTGGTACGATTCCCACCGTTCTCAAATCCTCTTCTCCGATCCAAATTCCAAGTCTAATTCCGTTGTCCCTGACCTGTTTTCGTTTTTCTCGAATACCGTTTATTCTGGGTTTTCGGATTCCGGTAAGGGTTTCTATAAGGTTTATTCTGATGTGTTTGATAAAATTCAGGCGAATGAGATTAATTTTGCTAAGAAATTAGGTTTAGGGATTGATTCTGTTAGACAAGCTCCTCTTATGGGGAACTTGGATAGTCCTTATGCGCAGGTTACGGCCTTTTATAGTTATTGGTTGGGATTTTCGACTGTTATGGATTTTTGTTGGGCGGATGAGTATGATGCTATGGCGGGTCCGAATAGGAAGTCACGGAGGTTGATGGAGGAAGAGAATAATAAGGTGAGGAGGAAGGCGAAGAGGGAGTATAATGATACTGTGAGGAAGTTGGCTGATTTTGTGAAGAAGAGGGATAAGAGAGTGATTGATATGAAGGTGAAGAAGAATTTGGAGATGGAGAAGAAGAAAGAGGAGGAGAAGGAGAGGAAAAGGAAGTTGGAGATGGAGAGGAAGGAGAGGGCTATGGCTTATGAGGAGCCTGATTGGGCTAAGGTTGATGAGGAAGAGGTTGAGGATTTGTACGAGGATGATGAGTCTGAGAAGAAAGATGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAATCATGAGCAGAGTAAGAAGCATAAGGAGAAAGTTGCCGAGTTCAAGGATTCACTTGATGATGAAGAGGAGTTAGAAGCTGAGGTGGATGAGGAAGGTGAAAGTGAAAGAGAAGGAGTTGATGAGGAGAGATTGGAAAGTGAGGAGGATGGAGTTAGGGTTGATGATTTGGAGGAGAGGATTCGAGACAGTCTTAATGTTGCAGATGAGGAGAGTGCAAATGGGGTTGAGCTGAATGATGATGGTGACGATGATGAATTTTTTGATGCTGAGCATGCAAAAGATGGGGAGGAGACTGGTGCGTCAGTTGATTTTGTTGTTAATGACGACGATGATGATGAGAATGATGTTCTTGAAACAATGGTATCTGGGCACAAGGGCCGGTTTGATTTTGATGAGAATGATGGCAACGATGACGATGTTGATGATGATGAAATTGGGGTTCTTGAAGCAATGCTGGCTGGACGTAAGAGCAGAAAACCCAGTGCTTCAACACACAAGCCCGAGGTTTCTGAAACTCCGACTCAAATTGAGAGTGAGAATGAGAATGATGGGGTTGGTGCTATGGAATATAACAACCGAAAGCCTGCAAAAAAGAAACGTAGAGCAAAGAAAGAGAAGGGTGGGAAAAATGGGGATGAAACTAATGTGCCTACTAATGGCAAATATGAGAAGAATGTAATCAATATTGGAGATGGTGATTCTTATGCACAAGAGTCTAGTTCTCAATATTTTGAGGAAAATGAGGATAATGCCGGTAAAGAGAATGAGCAGGTGGGTAGAGATAAGAAGAAGATTTCAAATCAACCTGTTGATAAAAAAGGAACTTCAAAGAACACAAAACCCAGATCAAAACTTTCAACCAGAGGAAGAAAACCAAATAGAAATCTTGGTCATTTTTGCGAGACATGTGAGGAGGAGTTTGAGTCAAGGAATAAGTTACATAAACATCTGAGCGACTCTGGGCATGCAGCAATGAAAAGTCGATAA 1923 0.4327 MASTAKRCHYEVLGLPRECSPEELRSAYRKLALQRHPDKLVKSGLSQSEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSKSNSVVPDLFSFFSNTVYSGFSDSGKGFYKVYSDVFDKIQANEINFAKKLGLGIDSVRQAPLMGNLDSPYAQVTAFYSYWLGFSTVMDFCWADEYDAMAGPNRKSRRLMEEENNKVRRKAKREYNDTVRKLADFVKKRDKRVIDMKVKKNLEMEKKKEEEKERKRKLEMERKERAMAYEEPDWAKVDEEEVEDLYEDDESEKKDEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFKDSLDDEEELEAEVDEEGESEREGVDEERLESEEDGVRVDDLEERIRDSLNVADEESANGVELNDDGDDDEFFDAEHAKDGEETGASVDFVVNDDDDDENDVLETMVSGHKGRFDFDENDGNDDDVDDDEIGVLEAMLAGRKSRKPSASTHKPEVSETPTQIESENENDGVGAMEYNNRKPAKKKRRAKKEKGGKNGDETNVPTNGKYEKNVINIGDGDSYAQESSSQYFEENEDNAGKENEQVGRDKKKISNQPVDKKGTSKNTKPRSKLSTRGRKPNRNLGHFCETCEEEFESRNKLHKHLSDSGHAAMKSR* 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3979 640 MobiDBLite consensus disorder prediction 307 329 - -
Mtr4g3979 640 Pfam Zinc-finger double-stranded RNA-binding 295 320 IPR022755 -
Mtr4g3979 640 ProSiteProfiles Zinc finger C2H2 type domain profile. 610 639 IPR013087 -
Mtr4g3979 640 MobiDBLite consensus disorder prediction 463 640 - -
Mtr4g3979 640 SMART dnaj_3 7 69 IPR001623 -
Mtr4g3979 640 ProSiteProfiles dnaJ domain profile. 8 77 IPR001623 -
Mtr4g3979 640 Gene3D Classic Zinc Finger 283 343 - -
Mtr4g3979 640 MobiDBLite consensus disorder prediction 606 640 - -
Mtr4g3979 640 ProSitePatterns Zinc finger C2H2 type domain signature. 612 634 IPR013087 -
Mtr4g3979 640 MobiDBLite consensus disorder prediction 544 558 - -
Mtr4g3979 640 MobiDBLite consensus disorder prediction 385 402 - -
Mtr4g3979 640 MobiDBLite consensus disorder prediction 559 590 - -
Mtr4g3979 640 Coils Coil 230 260 - -
Mtr4g3979 640 ProSiteProfiles Zinc finger C2H2 type domain profile. 295 324 IPR013087 -
Mtr4g3979 640 MobiDBLite consensus disorder prediction 357 378 - -
Mtr4g3979 640 SMART ZnF_U1_5 292 326 IPR003604 GO:0003676|GO:0008270
Mtr4g3979 640 PRINTS DnaJ domain signature 10 28 IPR001623 -
Mtr4g3979 640 PRINTS DnaJ domain signature 28 43 IPR001623 -
Mtr4g3979 640 PRINTS DnaJ domain signature 49 69 IPR001623 -
Mtr4g3979 640 MobiDBLite consensus disorder prediction 330 356 - -
Mtr4g3979 640 CDD DnaJ 8 66 IPR001623 -
Mtr4g3979 640 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Mtr4g3979 640 Pfam DnaJ domain 9 74 IPR001623 -
Mtr4g3979 640 SMART c2h2final6 295 319 IPR013087 -
Mtr4g3979 640 SMART c2h2final6 610 634 IPR013087 -
Mtr4g3979 640 Coils Coil 316 343 - -
Mtr4g3979 640 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 446 640 IPR044648 -
Mtr4g3979 640 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 439 IPR044648 -
Mtr4g3979 640 MobiDBLite consensus disorder prediction 478 493 - -
Mtr4g3979 640 Coils Coil 365 385 - -
Mtr4g3979 640 SUPERFAMILY beta-beta-alpha zinc fingers 285 338 IPR036236 -
Mtr4g3979 640 SUPERFAMILY Chaperone J-domain 5 104 IPR036869 -
Mtr4g3979 640 Gene3D DnaJ domain 1 93 IPR036869 -
Mtr4g3979 640 ProSitePatterns Zinc finger C2H2 type domain signature. 297 319 IPR013087 -
Mtr4g3979 640 MobiDBLite consensus disorder prediction 307 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3979 Mtr-Chr4 53547499 53550811 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3979 1 640 C2H2 Transcription Factor Family AT1G74250 49.070 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g3979 DnaJ 4.1e-21 CL0392