Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3969 ATGGAAGAAGATCAAATTCAAGAATTCAAACATGCTTGCAAATTCTGTAGCAAAAGCTTTCCTTGTGGTAGATCTTTAGGAGGTCACATGAGGTCTCATATCAACAACTTATCAGCTGAAAAAGCAGAACACAAAGAAAAGCAGCTTATATTTTCAACAAAAAAGAATGATAGCATTGGTTCTGAAGCTGCAACTAATGGTAGCTATGGTTTAAGAGAGAATCCAAAGAAGACGTGGAGAAAGAGAATTGCAGATTCAAGTGAAGATAGTTATGTGTATGACAAATTCTGCAAAGAGTGTGGAAAATGTTTTCACTCTTGGCAAGCTTTGTTCGGTCACATGAAGTGTCATTCAGAGAAAGAAAGAGTTTCTAACAGCTTGGAAGATCAAGATTCATGGACTAATGATGCTAAAGATGTTCAATCTGATAATGAAATCACTGCTCCAAATAGGAAGAAAAGATCAAAGAGAACAAGAACAAGGTATAACATGGTAGCTACTGCAACAGCTTCTTCTTCTGTTTCTGAGGTTGAACATGAGCAAGAAGAAGTTGCTATGAGCTTGATTATGCTTAGTAGAGATGTTAGTCCTTGGAGTGGTCTTCATTATCTTGCTGCTGAATCCTCTGATAATAATTCTGTTTACTTTGAAGCTCGATCTTCCGTTCGAACTAATCTTGTTACTAAATTTGATGCTAATATTGCAAAGTTGATGAAGCAAAGTGAGAACAAGAAGTATGAGTTAGGCAATTCTGTTTCCAAGAATTTCAAGTTCAAAGGGAAAAGTTTAGAGATTTTGGATACTGAAAAAGGATTCAAGATGATCAAAACTGGAGTTTCCATCAAAGGGTTTCTCAAATCCACAAAATCTGAGCTTGATTATCTGTCTACATTGGAAGATTCAGAAGTTGAAAATGGGAAAAGCAGAGTCAATGGAACAGAATCAGTTCTATCAAAGTCAGCTACTATAAGGAGTTCTGTGAACAACCCTCATCATGATCATGAAGATGAATTTATCAAGAATTTTAATAAGAGAGGAAAGTTTGAGTGTACTACTTGTAACAAAATCTTTCATTCTTATCAAGCTCTTGGAGGTCATAGAGCTAGTCATAAAAAGAACAAAGGGTGTTTTGCTTCTAAGATTGAGAGCAGTGAAAACAGCATTGAATTTGAAACTGATCTCTCCCATCATGAACCAACAACTGAAAGCAAGCTCATGAAGATAAGTGATAACATTGAATATGTTCAAAATATGGGAGAAAGAGAAACAGTTCGAGATTCCAAGAAGAAGATTAAAGGGCATCATGAGTGTCCAATTTGCTTTAAGGTTTTTCAATCTGGTCAAGCCTTAGGTGGACATAAAAGATCTCATATTGTTGCTACTGGTTCTGAGAGTAGAGTTGTACTTGAGGAACAAGTTCCACAGATTAGGGACTTTCTTGATCTTAATCTTCCTGCTGCTACTGAGGAAGAAAGTAACAGTCATGCTGATTCTAACAGACCTTGGTGGATAGTTGAAGGCAACCATAATCAAGAGGCACTGGTAGGGTAG 1551 0.3656 MEEDQIQEFKHACKFCSKSFPCGRSLGGHMRSHINNLSAEKAEHKEKQLIFSTKKNDSIGSEAATNGSYGLRENPKKTWRKRIADSSEDSYVYDKFCKECGKCFHSWQALFGHMKCHSEKERVSNSLEDQDSWTNDAKDVQSDNEITAPNRKKRSKRTRTRYNMVATATASSSVSEVEHEQEEVAMSLIMLSRDVSPWSGLHYLAAESSDNNSVYFEARSSVRTNLVTKFDANIAKLMKQSENKKYELGNSVSKNFKFKGKSLEILDTEKGFKMIKTGVSIKGFLKSTKSELDYLSTLEDSEVENGKSRVNGTESVLSKSATIRSSVNNPHHDHEDEFIKNFNKRGKFECTTCNKIFHSYQALGGHRASHKKNKGCFASKIESSENSIEFETDLSHHEPTTESKLMKISDNIEYVQNMGERETVRDSKKKIKGHHECPICFKVFQSGQALGGHKRSHIVATGSESRVVLEEQVPQIRDFLDLNLPAATEEESNSHADSNRPWWIVEGNHNQEALVG* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3969 516 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Mtr4g3969 516 ProSitePatterns Zinc finger C2H2 type domain signature. 437 457 IPR013087 -
Mtr4g3969 516 MobiDBLite consensus disorder prediction 126 158 - -
Mtr4g3969 516 SMART c2h2final6 95 117 IPR013087 -
Mtr4g3969 516 SMART c2h2final6 348 370 IPR013087 -
Mtr4g3969 516 SMART c2h2final6 435 457 IPR013087 -
Mtr4g3969 516 SMART c2h2final6 11 33 IPR013087 -
Mtr4g3969 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Mtr4g3969 516 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 516 - -
Mtr4g3969 516 ProSitePatterns Zinc finger C2H2 type domain signature. 350 370 IPR013087 -
Mtr4g3969 516 Pfam C2H2-type zinc finger 97 119 - -
Mtr4g3969 516 Pfam C2H2-type zinc finger 434 457 - -
Mtr4g3969 516 Pfam C2H2-type zinc finger 11 33 - -
Mtr4g3969 516 Pfam C2H2-type zinc finger 348 372 - -
Mtr4g3969 516 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Mtr4g3969 516 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 1 516 - -
Mtr4g3969 516 SUPERFAMILY beta-beta-alpha zinc fingers 96 370 IPR036236 -
Mtr4g3969 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 348 375 IPR013087 -
Mtr4g3969 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 38 IPR013087 -
Mtr4g3969 516 SUPERFAMILY beta-beta-alpha zinc fingers 8 36 IPR036236 -
Mtr4g3969 516 Gene3D Classic Zinc Finger 2 68 - -
Mtr4g3969 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 435 457 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3969 Mtr-Chr4 53442481 53444918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3969 333 494 C2H2 Transcription Factor Family AT2G45120 43.452 4.02e-30 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr4g3969 zf-C2H2_6 1.5e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3969 - - gmx:102666705 600.897