Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3959 ATGTCAGAGTTGCAGGAAACATATTCCTGTTGCTTCCTATTTTTACTCTCAATTTCCCTCATCCTTCTTTCAGGTAGGGTTGTTGTTGGAGATTCTTTGGACACAGACAAACAAATTCTGTTGAAGTTGAAATTGTACTTGGACAACAAAACTCTTGCAGACCAAGGAAAGTACATATATTGGGACACAAACAGTTCCAATTCAAATCCATGTGAATGGCAAGGAATTTCGTGTAACAAAGCAAAGAGAGTAATTGGCATAGATCTCTCTTACAGTGACATCACAGGAGAGATATTTCAAAGCTTCTCTCAGCTCACTGAGCTTACACATCTCGATCTCTCGCAGAACACGCTCTTTGGATATATTCCAAATGATTTAAGAAACTGTCACAAGCTATTGCATCTCAATCTCTCTCACAATATTCTTGATGGAGAATTGAATTTGACTGGATTGACAACCTTGCAGACACTTGATTTTTCCTTGAATAGATTTCATGGAGAAATTGGTCTGTGGAATTTGCCATCCATGTGTGAGAATTTAATCACTTTGAATATCTCAGGTAATAACTTAACTGGTGATATTGGTAATAGTTTTGATCAATGTTCAAAGTTGAAGTACTTGGATTTGAGCACCAACAAGCTGAGTGGAGGTATATGGAATGGATTTGCAAGGCTGAGGCAATTTTCTGTTGCTGAGAATCATCTCAGTGGAAACATTTCATCTGAAGCTTTTCCATTGAATTGTGAACTTGTGGAATTGGATCTTTGTCAAAATGGATTTGTTGGCGAAGCACCGAAGGAAATTGCTAACTGCAAGAATCTAACCATGTTGAATCTTTCAAGTAACAATTTTACTGGAGCTATCCCTATTGAAATGGGGTCCATTTCAAGGCTGAAAGGATTGTACTTGGGAGGAAACACCTTTTCAAGAGAAATTCCTGAGGCCCTATTGAAATTGAATGATTTGGTTTTCTTGGATTTGAGCAGAAACAAATTTGGTGGTGACATGCAAAAGATTTTTGGGGAATTTAAACAGGTGAGGTTTCTTCTTTTGCACTCTAATTCATACACTGGAGGATTGTTATCATCTGGAATTTTCACATTGCCGAACATTGCACGGTTAGACCTAAGCTTCAACAACTTTTCAGGTCCATTACCTGTTGAAATCTCTCATATGCAAAGTCTAAAACTTTTAATGTTATCATATAACCAATTCAATGGATCTATTCCATCAGAATTTGGAAATATGCGTAATTTACAAGCACTTGACCTTGCTTTCAACAAGTTGAGTGGACCAATACCTCCAAGCATTGGAAACTTGAGTTCTCTCTTGTGGTTGATGCTTGCAAACAATTCATTAACTGGAACAATCCCTTCAGAGTTAGGGAACTGTACTAGTTTATTATGGTTAAACCTCGCCAACAATAACCTCTCTGGAAAGTTTCCTCGCGAACTTTCTAAAATCGGAAAGAATGCGATGAAAACATTTGAAGCAAATAGGCGAGACGGTGGATTGACTGCTGGCTCTGGTGAATGTTTAGCAATGAAGAGATGGATACCTGCAGATTACCCTCCATTCAGCTTTGTGTATGATATTTTAACAAGGAAAAATTGTAGAGGACTTTGGAATAAATTGCTCAAAGGGTATGGAATTTTTCCATTTTGCACACCTGGGTCCTCCCTTAGGTTATCTTTAATATCAGGTTATGTTCAGTTAAGTGGAAACAAGCTAAGTGGTGAAATCCCTTCAGAGATTGGAACAATGGTGAATTTCAGTATGTTGCATTTGGGATTCAACAGTTTCTCTGGGAAGTTTCCACCTGAGTTGGGAAGTATTCCACTTATGGTCTTGAACTTGACTAGAAACAACTTTTCAGGTGAAATTCCTCAGGAAATTGGAAACTTAAAATGCTTGCAAAATCTTGATCTGTCTCACAACAATTTCTCAGGAAATTTTCCTACAAGTTTGAACAAAGTGGCTGAGCTTAACAAGTTCAACATCTCCTATAATCCCTTCATATATGGTGAGGTTTCATCAAGTGGACAATTTGTTACTTTTGAGAAAGATTCATATTTAGGCGACCCTTTGTTGATCCTTCCCGACTTCATCGACAACACTACAAGAAACAACAAAAACTCAACCTTTCACAATGACCATAAAAAGCCTGCAAAACTATCTGCATTCTTGGTTTTTCTGTCCATAACACTTGTTTTTATTATACTTGGCTTTCTAACAATAATAGTCTGTGCATTAGTCAAAACCCCATCAGATCAATATCTCTTGAAGGATCATACAAAACATTGCAATGATTCAAGTAGCTCAGGAATAGGGTCCTCACAGTGGTCATCTGATTCGGTTAAAGTCATTCGTTTGAACAAAACAGCTTTCACCTATGCAGACATTTTGATAGCAACAAGCAGCTTCTCAGAAAACAGAATCATAGGAAAAGGTGGATTTGGAACAGTATACAAAGGAGTTTTCGCAGACGGTAGAGAAGTGGCAGTGAAGAAGCTTCTAAGCGAAGGACCTGAAGGCGAAAAGGAATTCCAAGCTGAAATGGAAGTTCTAAGTGGCCATGGTTTCGGTTGGCCTCATCCAAACCTCGTCACACTCCATGGTTGGTGTCTAAGCAATTCAGAAAAGATACTTGTTTATGAGTACATAGAAGGTGGAAGCTTAGAAGATCTAATAACCGATAGAACTCGTCTGACATGGAAGAAAAGGCTGCAAGTTGCTATCGACGTGGCTCGCGCGCTTGTCTATTTACATCATGAATGTTATCCTTCTATTGTCCATAGAGATGTGAAGGCTAGTAATGTGATGCTAGACAAAGAAGGGAAAGCAAAAGTAACAGATTTTGGATTAGCTAGAGTTGTTAACATTGGTGATAGTCATGTGAGTACAATGGTTGCAGGAACTGTTGGATATGTTGCACCTGAATATGGACAAACAATGAAAGCTAGTACAAAAGGTGATGTTTATAGTTATGGTGTGTTGATTATGGAGTTGGCTACAGGTAGAAAAGCAGTAGATGGAGGTGAAGAGTGTTTGGTTGAATGGACAAGGCGTGTCATGGGAAGAAAACAACAAACAAAACATCAACAACATCATGTGTTGAGTCATTTGGGTTCAAGACTTGTTGGTGGGGCAGAGGAGATGGGTGAATTGCTATGTATTGGTTTGAAGTGTACAAATGAGGCACCAAATGCTAGGCCAAATATGAAACAAGTTTTGACTATGCTTGTAATGATATCTAAATCTAATGTTGGAGATTCATCAAGTGATCATGGGCACAATGTTTAG 3303 0.3836 MSELQETYSCCFLFLLSISLILLSGRVVVGDSLDTDKQILLKLKLYLDNKTLADQGKYIYWDTNSSNSNPCEWQGISCNKAKRVIGIDLSYSDITGEIFQSFSQLTELTHLDLSQNTLFGYIPNDLRNCHKLLHLNLSHNILDGELNLTGLTTLQTLDFSLNRFHGEIGLWNLPSMCENLITLNISGNNLTGDIGNSFDQCSKLKYLDLSTNKLSGGIWNGFARLRQFSVAENHLSGNISSEAFPLNCELVELDLCQNGFVGEAPKEIANCKNLTMLNLSSNNFTGAIPIEMGSISRLKGLYLGGNTFSREIPEALLKLNDLVFLDLSRNKFGGDMQKIFGEFKQVRFLLLHSNSYTGGLLSSGIFTLPNIARLDLSFNNFSGPLPVEISHMQSLKLLMLSYNQFNGSIPSEFGNMRNLQALDLAFNKLSGPIPPSIGNLSSLLWLMLANNSLTGTIPSELGNCTSLLWLNLANNNLSGKFPRELSKIGKNAMKTFEANRRDGGLTAGSGECLAMKRWIPADYPPFSFVYDILTRKNCRGLWNKLLKGYGIFPFCTPGSSLRLSLISGYVQLSGNKLSGEIPSEIGTMVNFSMLHLGFNSFSGKFPPELGSIPLMVLNLTRNNFSGEIPQEIGNLKCLQNLDLSHNNFSGNFPTSLNKVAELNKFNISYNPFIYGEVSSSGQFVTFEKDSYLGDPLLILPDFIDNTTRNNKNSTFHNDHKKPAKLSAFLVFLSITLVFIILGFLTIIVCALVKTPSDQYLLKDHTKHCNDSSSSGIGSSQWSSDSVKVIRLNKTAFTYADILIATSSFSENRIIGKGGFGTVYKGVFADGREVAVKKLLSEGPEGEKEFQAEMEVLSGHGFGWPHPNLVTLHGWCLSNSEKILVYEYIEGGSLEDLITDRTRLTWKKRLQVAIDVARALVYLHHECYPSIVHRDVKASNVMLDKEGKAKVTDFGLARVVNIGDSHVSTMVAGTVGYVAPEYGQTMKASTKGDVYSYGVLIMELATGRKAVDGGEECLVEWTRRVMGRKQQTKHQQHHVLSHLGSRLVGGAEEMGELLCIGLKCTNEAPNARPNMKQVLTMLVMISKSNVGDSSSDHGHNV* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3959 1100 Gene3D Phosphorylase Kinase; domain 1 771 887 - -
Mtr4g3959 1100 Gene3D Transferase(Phosphotransferase) domain 1 888 1097 - -
Mtr4g3959 1100 SUPERFAMILY L domain-like 569 677 - -
Mtr4g3959 1100 ProSiteProfiles Protein kinase domain profile. 808 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3959 1100 SUPERFAMILY L domain-like 46 332 - -
Mtr4g3959 1100 SUPERFAMILY Protein kinase-like (PK-like) 783 1084 IPR011009 -
Mtr4g3959 1100 SUPERFAMILY L domain-like 223 483 - -
Mtr4g3959 1100 Pfam Leucine Rich Repeat 108 129 IPR001611 GO:0005515
Mtr4g3959 1100 Pfam Protein kinase domain 809 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3959 1100 Gene3D Ribonuclease Inhibitor 32 175 IPR032675 -
Mtr4g3959 1100 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Mtr4g3959 1100 Pfam Leucine rich repeat 179 226 IPR001611 GO:0005515
Mtr4g3959 1100 Pfam Leucine rich repeat 369 429 IPR001611 GO:0005515
Mtr4g3959 1100 Gene3D Ribonuclease Inhibitor 246 320 IPR032675 -
Mtr4g3959 1100 Gene3D Ribonuclease Inhibitor 176 245 IPR032675 -
Mtr4g3959 1100 Gene3D Ribonuclease Inhibitor 321 500 IPR032675 -
Mtr4g3959 1100 CDD STKc_IRAK 814 1081 - -
Mtr4g3959 1100 ProSitePatterns Protein kinases ATP-binding region signature. 814 837 IPR017441 GO:0005524
Mtr4g3959 1100 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 5 1087 - -
Mtr4g3959 1100 SMART serkin_6 808 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3959 1100 Gene3D Ribonuclease Inhibitor 559 715 IPR032675 -
Mtr4g3959 1100 Pfam Leucine rich repeat N-terminal domain 34 79 IPR013210 -
Mtr4g3959 1100 SMART LRR_typ_2 416 439 IPR003591 -
Mtr4g3959 1100 SMART LRR_typ_2 440 464 IPR003591 -
Mtr4g3959 1100 SMART LRR_typ_2 105 129 IPR003591 -
Mtr4g3959 1100 SMART LRR_typ_2 392 415 IPR003591 -
Mtr4g3959 1100 SMART LRR_typ_2 295 319 IPR003591 -
Mtr4g3959 1100 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 1087 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3959 Mtr-Chr4 53355994 53359892 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3959 65 1094 Receptor kinase-like Gene Family AT4G39400 33.363 4.91e-152 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Mtr4g3959 Pkinase 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3959 - - gmx:100816573 1597.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3959 4 53355994 53359892 Mtr4g3959 4 53355994 53359892 ECH