Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3953 ATGGGTTGTGTGTTTGTGAAGCAAGGTGTGTCTGTGACACCTGCCGTTGACCATTCAGTTGACTTACAGAGGAATAATAGTGTAAAGAAGAAGAATAAGAAGAAGAATACCGAGTCATTTGGAGTGAGTTGGAGCGAGGTAGGTGACTCAGGAAGAACAAGTTTGAATGGTGAAGGTGGGTCATTGAGTTTCAGGTTAGGGAATCTTAGTAAGTATGTGGAGGGAGAACAAGCCGCGGCTGGTTGGCCGGTTTGGCTTAGCGCGGTTGCTTCCGAAGCTATTCATGGTTGGGTTCCTCTCCGTTCTGATGCATTTGAAAAACTTGACAAGATTGGGCAGGGTACATATAGTAGTGTTTTCCGAGCGAAGGAGATTGAGACAGGGAAGATAGTGGCATTAAAGAAGGTTAGATTTGACAATTTTGAGCCAGAAAGTGTGAGGTTTATGGCAAGGGAAATTATGATTCTTAGAAGGCTTGATCATCCTAATATCATTAAACTAGAAGGATTGATTACTTCAAGATTGTCTTGTAGCATCTACCTTGTATTTGAGTACATGGAGCATGATGTCACAGGGCTCTTGTCTAAACCAGAAATCAGCTTTACTGAATCACAGATTAAGTGTTACATGAAACAATTGTTATCTGGTCTTGAGCACTGTCATTCAAGGGGTGTAATGCACCGTGACATCAAAGGATCAAATCTTCTGGTGAATAATGAAGGGATATTAAAGGTAGCAGATTTTGGATTGGCAAATTTCACTAATTCTGGGAAGAAGCAGCCTCTCACTAGTCGCGTTGTCACCTTATGGTACCGTCCTCCAGAACTTTTGCTTGGTTCAACAGATTATGGTCCATCTGTGGATCTTTGGAGTGTTGGTTGCGTGTTTGCAGAGCTATTAGTTGGGAAGCCTATACTTAAGGGAAGAACAGAGGTTGAACAATTGCATAAAATTTTCAAGCTTTGCGGCTCTCCACCCGATGAATACTGGAAAAAGACCAGACTGCCTCACGCAACTTTGTTCAAGCCACAGCAACCATATGATAGTTGCCTAAGAGAAACATTTAAAGATTTTTCTGCAACCAGTGTAAACCTGTTACAAAATCTTCTTTCTATTGAACCAAACAAACGTGGAACTGCCTCATCTGCTCTCTCATTGGAGTATTTCAAAACAAAACCTTATGCATGTGATCCATCAAGCTTACCGGTATACCCACCTAGCAAAGAGATCGATGCAAAACACGAGGAAGAGACAAAAAGGAAAAAGATCGCTGGGCGAGTTTGTGGACCTGAAAAAAGAAGAACATCAAGAAAGCCAGTAGGACTGAGTAAATTACCTCTAGCAGAGGATTTGACAAGTCGAGTTCAAACTTCACTAAACATGGATGATAGATCTGTCAACGTCCTTAAAGAAGAGAACACTAACATAGGTGAAATGGCACCAAAGCCAACCGCTGGTAAACCAGAAGATGCTTCCCATAAAAAGGATGCATCTCAAGTAGATATTCCCTTTCATGGACCGTTACAAGTTTCAAAATCAAGTGGATTTGCATGGGCAAAAAGGCGTAAAGATGACGCTGCTTCAATTAGATCCCACACTCGATCTATTTCTAAAGGACATATATTTAGTTCATTAGAAACTTCTACACTAAATTCAAATAACATTTCTGATAATATAAACAACGAAAATAAGGAAGTTTTTGGGGGACGCAACAGCTCCAGAGGTCATGATCTATTTGAAATTTCTAAACTAGTGATGCAAAATCAATGGAGTAAGTTTGAACGTCCAGATTCCTTTGATACTTCTGAAGAGTACCACTCACAAGAACTGTCTATGATGCTTTATCATAGAGAAGATTCAATGTCCAAGAGAAGTAACAGGAGTTATCAGGATCAAGGAGAGAAGGTGGAATTTTCAGGGCCAATAATATCTCAAATGCATACAGTTGACGAGCTCTTAGAAAGACATGAGCGCCACATTCGACATACAGTCCGAAGATCATGGTTTCAGAGAGGTAAGAAGCATGGGAATTAA 2034 0.4061 MGCVFVKQGVSVTPAVDHSVDLQRNNSVKKKNKKKNTESFGVSWSEVGDSGRTSLNGEGGSLSFRLGNLSKYVEGEQAAAGWPVWLSAVASEAIHGWVPLRSDAFEKLDKIGQGTYSSVFRAKEIETGKIVALKKVRFDNFEPESVRFMAREIMILRRLDHPNIIKLEGLITSRLSCSIYLVFEYMEHDVTGLLSKPEISFTESQIKCYMKQLLSGLEHCHSRGVMHRDIKGSNLLVNNEGILKVADFGLANFTNSGKKQPLTSRVVTLWYRPPELLLGSTDYGPSVDLWSVGCVFAELLVGKPILKGRTEVEQLHKIFKLCGSPPDEYWKKTRLPHATLFKPQQPYDSCLRETFKDFSATSVNLLQNLLSIEPNKRGTASSALSLEYFKTKPYACDPSSLPVYPPSKEIDAKHEEETKRKKIAGRVCGPEKRRTSRKPVGLSKLPLAEDLTSRVQTSLNMDDRSVNVLKEENTNIGEMAPKPTAGKPEDASHKKDASQVDIPFHGPLQVSKSSGFAWAKRRKDDAASIRSHTRSISKGHIFSSLETSTLNSNNISDNINNENKEVFGGRNSSRGHDLFEISKLVMQNQWSKFERPDSFDTSEEYHSQELSMMLYHREDSMSKRSNRSYQDQGEKVEFSGPIISQMHTVDELLERHERHIRHTVRRSWFQRGKKHGN* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3953 677 SMART serkin_6 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3953 677 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Mtr4g3953 677 Gene3D Phosphorylase Kinase; domain 1 92 187 - -
Mtr4g3953 677 PANTHER CELL DIVISION PROTEIN KINASE 35 670 - -
Mtr4g3953 677 Gene3D Transferase(Phosphotransferase) domain 1 188 429 - -
Mtr4g3953 677 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Mtr4g3953 677 MobiDBLite consensus disorder prediction 471 508 - -
Mtr4g3953 677 MobiDBLite consensus disorder prediction 411 442 - -
Mtr4g3953 677 CDD STKc_CDK9_like 105 389 - -
Mtr4g3953 677 SUPERFAMILY Protein kinase-like (PK-like) 99 396 IPR011009 -
Mtr4g3953 677 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 35 670 - -
Mtr4g3953 677 ProSiteProfiles Protein kinase domain profile. 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3953 677 MobiDBLite consensus disorder prediction 411 438 - -
Mtr4g3953 677 Pfam Protein kinase domain 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3953 Mtr-Chr4 53311908 53316619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3953 97 446 Core Cell Cycle Gene Families AT5G10270 49.185 5.63e-114 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Mtr4g3953 Pkinase 8.5e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3953 - - gmx:100816047 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3953 4 53311908 53316619 Mtr4g3953 4 53311908 53316619 ECH