Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3952 ATGGCGCTGTTCAGAAGATTTTTCTACCGAAAGCCGCCGGATCGGCTTTTGGAGATCTCCGACAGAGTATATGTTTTTGATTGTTGCTTCTCCACGGACGTCTTGGAAGAAGATGAATACAGAGTTTATATGGGGGGAGTTGTGGCTCAGCTACAGGATCACTTTCCAGATGCTTCTTTCATGGTGTTCAACTTCCGAGAAGGGGAGAGACGCACTCAAGTCTCAGACATACTTTCTCAATATGATATGACAGTGATGGAGTACCCTCGGCAATATGAGGGCTGTCCTCTTCTGCCTTTAGAGATGATCCATCACTTTCTTCGATCAAGTGAAAGCTGGTTGTCTGTGGAGGGGCAACAAAATGTGCTTTTGATGCATTGCGAAAGGGGGGGTTGGCCTGTGCTGGCGTTTATGCTAGCAGGTCTTCTGTTATTCCGGAAACAGTACACTGGCGAGCAAAAGACTCTTGAAATGGTCTACAAGCAAGCTCCCAGAGAACTACTCCACCTATTAACTCCGTTGAACCCACAGCCTTCTCAGTTCAGATATCTTCAGTATATTTCGAGGAGACATCTGGGTTCTGAGTGGCCACCATCAGAAACACCCTTGTATCTGGATTGTTTGATTCTTAGAGACCTTCCATTATTTGATGATGGAAAAGGTTGCAGGCCTGTTGTGCGTGTTTATGGCCCGGACCCTTCTAAACCTGCCAATAGAAGTTCAAAGCTTCTTTTTTCAACCTCAAACTCCATAAAGCATGCTCGACACTATCAGCAGGCAGAGTGTGTGCTTGTGAAGATTGATATCCATTGTCGTGTTCAAGGAGATGTGGTTCTTGAGTGCGTAAATTTAAATGAAGATTGTACTGGCGAGGAGATGATGTTTAGAATTATGTTCCATACTGCATTTGTGCGGTCAAATATATTGATACTGAGCCGGGACGAAATTGATATTTTATGGGATGCAAAGGATCAATATCCCAAGGAATTCAAAGCAGAGGTGCTTTTTTTGGACGCTGATGCTGTTATACCTGATCTAAACACAGTAACGGTGAATAAAGATGCAAATGAGACAGAAAGTCCTGATGTAGAAAGTGCTTCACCTGAGGAATTCTATGACATGGAAGAGATTTTCAGCAATGTGATTGATGCACAGGAAAGTAAGTCAGAGGATGATTCTCATATTTTTCATGACAATGCAGGGGATGATGAAAATCGTAAAGTGATCTGGAGGGAGGATTCAGATCCTCTTGCTTTTCAGGATTGCACACTAGATGATGGGATTAACAAACAGGTTGGAAAGATGGATTCCGGTATTAATGGTGTGAAAGATATCTCTGTTGATGATGTTAACTACAAGTTCAATGAGAGCATGGATTCAGATCCTCAGGCAGTGAAGGACATTGCCATGGACGATGTAGAAATTAAGTTAACTTCCACTGCCATCACTTATGATATGACGATACCTCTGGAAACAAAGGAAATCACGGAGGATGCTGATCGGGGATTGGCAACTATACATGAGAAATGCGATGAAGGTGACGAAGCGACAGAAGAGGAATTAGATTACAAGGAAGGGAAGCCTATGCCTGATAGTTCCAAACAAAAATCAGGCAAACTACTTCCATCTACTGCTAAGAAACAACTTCCATCAAACTCAAAGCCAGGAGATACTGTTGGAAAACAAAAGATTAAAGAAAACCCTGCTTTTCAGGCGAAACAAGCTAAACCAACTGCAGTGTTAAGGTGGATTCCTTCTAACAAGGGTTCGTACACAAATTCAATGCATGTATATTATCCACCTACAAGGATTAATAGTGCCCCTGCTGGACTGTCAAATTTAACCACTTCAAAGGAGAAAACGGAAGATAGCAAAGCAAGATCTTTATCTGCTCCTTTTGGTTCTGGAGTAGTTGTTTCCGCTGACATGAAAATTGACCTGAAAAGTCGGAAGGTAGGCGCATCGAAATCTTTTGGCCACACAGTATCAGAAATTGGTGCAAAATGTCCACCACCACCACTATCAGTTAAAGAGACATCTCTTAAGCTAGCTGCTCAGGCACAAGAACAGAGGTCAGAGCAATTGCTACAGCCTCCCCCACAGTCTCCTCCTCTCCCTCCTCCTCCTCCGCCACCACCACCACCACCACGTGCTTTAGGCGACTCTTCACATTATTTTGGACCGTTAACGCCACTTGCAACACCATCTTCTGTGGTTGGAAAGGGATCCACCGTACCACCTCCGCCACCACCTCCACCGCCATCGTTAACATCATTTAGTAGACAAGACATTAAGGTGAATTTACAGGCTGCAACTTCTCATCCACCTCCACCACCACCTCCACCCTCCTGGAAGTCTGTGGCTTCATCAATAGTTGGAGAGACTTGTGGTTCTTTACCACTCTCCCCGCCCGCTCTTCCCTTTGCAAGCAGTGAAATCACATCAAAATTTTCTGAAGTGCTTACTGCAGTGGCCCCGTCAAGGCCTCCTCCTCCACCACCACCACCACCACCCCCAATTCCCCCTCCAAGGTACGAAATTTCAGCCATTCCTCCACCACCATCAACAGTACCTCCTACAAAGCATGGAATTTCATCAATTCCTCCTCCACCTCCTCCCCCTCCCCCCTCATTTTCTACGTCTTCAACAAACATGTCTCCATTCTCGCCACCTCCAGTTGCATCTCATAAAGCTCTACCCCCACCGCCACCCCCACCTCCACCACCCTTTGCTAATTCATATACAGGTTCACCTACACCACCTCTTCCTCCAGCTCCTTTTTGCAAGGCTCCACCACCTCCGCCTCCACCTCCTTTTACTAATGCTCCACCACAACCACCTTTAACTAAAGCTCCACCTCCACCACCACCACCACCACCTCCTCCTTTTACTAGTGCTCCACCAACACCACCCCCACCTCCTCCACCCCCTTTTAGTACATCCCAGTCCCCACCTTCTCCTTTTAGTAGAGCTCCACCGCCCCCACCACCACCTCTTCCTCAGTCAGGTGGATCCCCACCTCCACCTCCACCTCCTCCAATGTCCAAAGCCCCTCCACCTCCCCCTCCTCCAATGTCCAGAGCCCCTCCACCTCCCCCTCCTCCAATGTATGGCTCCCCTCCACCCCCACCAATGTCCAGAGCTCCTCCACCTCCTCCAATGTCTGGAGCCCCTCCACCTCCACCTCCTCCAATGTCTAGAGCTCCTCCACCGCCTCCTCCAATGCACGGAGCACCACCACCACCGCCTCCTGGTGGTCAAGGTCCGCCTCCTCCCCCACCTCCCGGTGGTCGAGGCCCGCCTCCTCCCCCTCCTCCCGGTGGTCGAGGCCCACCTCCTCCCCCTCCTCCTGGTGGTCGAGGAGGCCCACCTCCTCCACCTATTCCTGGTGGTGCACCTCCACCGCCTCCACCCTTGGGTTCCAAAGGGGCAAATGTTGGTCCTGCACGCCCTGGTGCACCAGGGCGTGGATATGCACGTCCTGGTGCGGTGGCACCCCGTAGATCCTCCTTAAAGCCTTTGCATTGGAGTAAGGTTACAAGGGCATTGCAAGGAAGTTTATGGGAAGAATTACAAAGACACGGTGAACCTCAAACTGCATCAGAGTTTGATGTTTCAGAGCTAGAGAAGCTTTTCTCTGCAAATGTTCCAAAACCTACTGATTCAAGTAGCAAATCTGGAGGGAGGCGCAAGTCTGCTGGATCTAAACCTGACAAAATTCAATTGGTTGACCTAAGGAGAGCCAATAATACGGAAATCATGCTAACTAAGGTTAAGATGCCACTCCCTGATATGATGGCTGCAGTACTGGCTTTGGATGACTCGGTATTAGATGTTGATCAGGTGGAAAATCTCATTAAGTTTTGTCCTACCAAAGAGGAAATGGAACTTTTAAAGGCATACACTGGCGACAAGGAGAGTTTGGGGAAGTGTGAACAGTTTTTTTTGGAGCTGATGAAGGTGCCAAGGGTGGAGTCAAAATTAAGAGTATTTGCTTTCAAAATTCAGTTTCAGGCTCAGGTTACAGAATTTAGGAGGAGTTTAAACACTGTGAACTCAGCCTGTGAAGAGGTCCGGAAATCTGACAAACTGAAAGATATCATGAAGAAAATTCTTTTTTTGGGTAATACATTGAATCAGGGAACGGCAAGAGTTGGATTTAAGTTGGATAGTCTTTTAAAGCTCACTGACACTCGTGCTTCTAACAGTAAGATGACACTAATGCATTATCTTTGCAAGGTGCTAGCTGAAAGGTCGCCTGGACTCCTTGATTTTCACAAAGACCTTGGTAGTCTGGAAGGTGCCTCTAAGATACAATTGAAATCATTAGCAGAAGAGATGCAGGCAATCACCAAGGGATTAGAAAAGGTTAAACAAGAGCTTGCTGGTTCGGAAAATGATGGACCTGTGTCCGAAGTTTTCTGTAAGACATTGAAAGAATTCATCACTGCATCTGAGTCGGACGTGGCAGATCTACTAAACTTATATTCTATGGTGGGTAAAAACGCGGATGCACTTGCACAGTATTTTGGCGAGAATCCTGCTCAATGCCCATGTGAACAAGTTACTGCAACTCTATTAAATTTTATAAGGTTGTTCCGGAAAGCACATGAAGAGAATTGCAAACAAGCAGAGTTAGAAAAGAAGAAAGCCGAGAAAGAGGCTGAAACGGAGAAGGCTAAGGGCGTTAACTTAACAAAGAAGAGTGCAAAAGATAGTTGA 4722 0.4687 MALFRRFFYRKPPDRLLEISDRVYVFDCCFSTDVLEEDEYRVYMGGVVAQLQDHFPDASFMVFNFREGERRTQVSDILSQYDMTVMEYPRQYEGCPLLPLEMIHHFLRSSESWLSVEGQQNVLLMHCERGGWPVLAFMLAGLLLFRKQYTGEQKTLEMVYKQAPRELLHLLTPLNPQPSQFRYLQYISRRHLGSEWPPSETPLYLDCLILRDLPLFDDGKGCRPVVRVYGPDPSKPANRSSKLLFSTSNSIKHARHYQQAECVLVKIDIHCRVQGDVVLECVNLNEDCTGEEMMFRIMFHTAFVRSNILILSRDEIDILWDAKDQYPKEFKAEVLFLDADAVIPDLNTVTVNKDANETESPDVESASPEEFYDMEEIFSNVIDAQESKSEDDSHIFHDNAGDDENRKVIWREDSDPLAFQDCTLDDGINKQVGKMDSGINGVKDISVDDVNYKFNESMDSDPQAVKDIAMDDVEIKLTSTAITYDMTIPLETKEITEDADRGLATIHEKCDEGDEATEEELDYKEGKPMPDSSKQKSGKLLPSTAKKQLPSNSKPGDTVGKQKIKENPAFQAKQAKPTAVLRWIPSNKGSYTNSMHVYYPPTRINSAPAGLSNLTTSKEKTEDSKARSLSAPFGSGVVVSADMKIDLKSRKVGASKSFGHTVSEIGAKCPPPPLSVKETSLKLAAQAQEQRSEQLLQPPPQSPPLPPPPPPPPPPPRALGDSSHYFGPLTPLATPSSVVGKGSTVPPPPPPPPPSLTSFSRQDIKVNLQAATSHPPPPPPPPSWKSVASSIVGETCGSLPLSPPALPFASSEITSKFSEVLTAVAPSRPPPPPPPPPPPIPPPRYEISAIPPPPSTVPPTKHGISSIPPPPPPPPPSFSTSSTNMSPFSPPPVASHKALPPPPPPPPPPFANSYTGSPTPPLPPAPFCKAPPPPPPPPFTNAPPQPPLTKAPPPPPPPPPPPFTSAPPTPPPPPPPPFSTSQSPPSPFSRAPPPPPPPLPQSGGSPPPPPPPPMSKAPPPPPPPMSRAPPPPPPPMYGSPPPPPMSRAPPPPPMSGAPPPPPPPMSRAPPPPPPMHGAPPPPPPGGQGPPPPPPPGGRGPPPPPPPGGRGPPPPPPPGGRGGPPPPPIPGGAPPPPPPLGSKGANVGPARPGAPGRGYARPGAVAPRRSSLKPLHWSKVTRALQGSLWEELQRHGEPQTASEFDVSELEKLFSANVPKPTDSSSKSGGRRKSAGSKPDKIQLVDLRRANNTEIMLTKVKMPLPDMMAAVLALDDSVLDVDQVENLIKFCPTKEEMELLKAYTGDKESLGKCEQFFLELMKVPRVESKLRVFAFKIQFQAQVTEFRRSLNTVNSACEEVRKSDKLKDIMKKILFLGNTLNQGTARVGFKLDSLLKLTDTRASNSKMTLMHYLCKVLAERSPGLLDFHKDLGSLEGASKIQLKSLAEEMQAITKGLEKVKQELAGSENDGPVSEVFCKTLKEFITASESDVADLLNLYSMVGKNADALAQYFGENPAQCPCEQVTATLLNFIRLFRKAHEENCKQAELEKKKAEKEAETEKAKGVNLTKKSAKDS* 1574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 742 757 - -
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 819 1169 - -
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 536 558 - -
Mtr4g3952 1573 Pfam C2 domain of PTEN tumour-suppressor protein 199 336 IPR014020 -
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 681 696 - -
Mtr4g3952 1573 SMART PTEN_C2_2 198 338 IPR014020 -
Mtr4g3952 1573 Coils Coil 1534 1568 - -
Mtr4g3952 1573 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 13 188 IPR029021 -
Mtr4g3952 1573 Gene3D Formin, FH2 domain 1160 1545 IPR042201 -
Mtr4g3952 1573 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
Mtr4g3952 1573 CDD PTP_PTEN-like 16 190 - -
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 1213 1240 - -
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 662 789 - -
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 607 628 - -
Mtr4g3952 1573 Coils Coil 1440 1467 - -
Mtr4g3952 1573 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 336 IPR035892 -
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 506 576 - -
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 697 719 - -
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 1546 1573 - -
Mtr4g3952 1573 ProSiteProfiles Formin homology-2 (FH2) domain profile. 1161 1559 IPR015425 -
Mtr4g3952 1573 Gene3D - 205 336 - -
Mtr4g3952 1573 Pfam Formin Homology 2 Domain 1167 1533 IPR015425 -
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 893 1142 - -
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 825 880 - -
Mtr4g3952 1573 SMART it6_source 746 1573 IPR015425 -
Mtr4g3952 1573 MobiDBLite consensus disorder prediction 1216 1230 - -
Mtr4g3952 1573 SUPERFAMILY Formin homology 2 domain (FH2 domain) 1174 1553 - -
Mtr4g3952 1573 Gene3D Protein tyrosine phosphatase superfamily 14 204 IPR029021 -
Mtr4g3952 1573 PANTHER FORMIN-J 943 1567 - -
Mtr4g3952 1573 PANTHER FORMIN-J 1 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3952 Mtr-Chr4 53268211 53281632 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3952 1 635 FH2 protein (formin) Gene Family AT5G07740 60.000 0.0 778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3952 4 53268211 53281632 Mtr4g3952 4 53268211 53281632 ECH