Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3949 ATGGAAGAAGAAGAGAATAAAGAGGTTCATATGAAACCTTCATTTAATTTCTTCTCCATTTTCATTCTTATAATTTTTTTATTTACACCCTCCAATTCTGATTCTACCACCATTGATCATTCTTTATCACCTTATGTCAATTACCTTATTGATTGTGGCTCTTCCACCAAAACTCAACTAATAGATGGTAGAATCTTCAAATCTGATCGAGAAACCACTTCTTTTCTTTCAACAACCGAAGATATTCAAGTTTCAGTTGATTTCATTAACATAAACCTCCCTCCTTCATTGCCGCCTTCATCATTGCCTTTGTATCAAACTGCAAGAGTTTTCACAGAACAATCATCATACACTTTTTACATTTCCAAAACTGGTAGACTTTGGATTCGTCTTTACTTCTTTCCTATTTCTAACCCTTCTTACAATCTAACAAGTTTTGTTTTCTCTGTTTATACGGATCACTTTGTACTCTTGCATGAATTCTCTCATAGTAATAACAATTCACTTGTTTTCAAGGAATATCTTGTTAATGTTTCTGATACTAGATTCTCTCTCAAGTTCATACCAAAAAAAAAGTCCTTTGCATTCATCAATGCCATTGAAATTGTTTCAGCTCCTGATACACTTATATCAGATTCAGCAACTCAAGTTTCACCACTTGGAGAATTCAATGGTTTGACGAAATCAGCTCTGCAAGTATCTTATAGAATAAATGTTGGTGGCCCCACCATAACTCCTGATGGTGACACCTTGTCAAGAACATGGGAACCTGATGATTCATATAACATTTTCCCACAAGGCTCTTCCAATGTTTCGGTCCCCAAGAAACGGATAAAGTATCCACAAGATAGCGTCGTAACTGTAACACCCTTAATTGCTCCAAACTCAGTTTATGCAAGTGGTGTACAGATGAAGGAATCAAGACTTCTGCAACCAGATTTCAATCTAAGTTGGATGGTGAATGTTGAAAGGAGCTATTCCTATCTGATAAGAATGCATTTTTGTGACATTGTTAGCAAAAGTCTTGATCAATTATATTTCAATGTATACATCAATGGGATTGAGGTTGTGGAAGCTTTGGACCTTTCATCTGAAACCAAAGCCTTATCAACAGCTGTTTACAAGGACTTTGTGCTTGGTTCATGTAATATCACAAATGGTTCCATCTTGATTCAAGTAGGACCAACTTATCTTCAACAAAGTACAACCAACGCAATTTTGAATGGATTTGAGGTGATGAAAATGAGCAATAGTGCCAATAGTTTGGATGGTTTTTTCTCTGTTGATGGAAAATATAAAGGACCAAGTGTAACATCCAACGTAATGAAAATTGTTGCTATTGCTGGTTTGGTATTGGCTGTGATATCATTGTTGTTACTAGTAGTGATGTATATTAGGTGGTTAAAAAGACCTTTAGATTGGAAAGAAAGTAGAGGTTTCTCTTCATGGCTCTTACCTCTTTGTCCAAAATCTAAAAAAAGTTGCAGTGCAAACGCAAATGCATTTGATTCACCTAAGAATAAGCATGGTGGTCATGATGTTCATCACTCTCCAAGAGGGACAGGAAGGTTCTTTCATTTCATCGAATTGCAACGAGCTACAGATAATTTTGATGAAAAGAGAGTGATTGGTTATGGAGGATTTGGTAAAGTGTACCTTGGGACATTGGATGATGGAACAAATGTTGCTGTAAAAAGAGGAGGTGGTGGTTCTGAGCAAGGAATAAATGAGTTCAGAACCGAACTAAAGATGCTTTCTAAGCTGCGACATCGCCACCTAGTTTCACTAATAGGTTTCTGTGATGAAAACTCAGAGATGGTTCTTGTATACGATTACATGTCTAATGGCCCTTTTCGCTCGCACCTTTATAACTCCAACTTTTCTCCTTTGTCATGGCAAAAGAGGCTTGAAATATGCATTGGCGCTGCTCGTGGTTTGCATTATCTCCATACAGGTGCATCTCAAAGTATCATACACCGTGACGTGAAGACAACAAATATACTCTTGGATGAGAATTATGTTGCCAAGGTTTCTGATTTTGGTTTATCTAAAGCTATACAAGATAAATCTCAAATAAGCACTGCTGTTAAGGGAAGTTTTGGATACCTAGATCCTGAATATTATAGGAGCCAACAACTGACTCAAAAATCGGATATATACTCATTTGGTGTAGTCCTCTTTGAGGTATTATGTGCTAGGCCAGTTGTTTCTCCGACATTGCCAAGAGAACAAGCTAACTTGGCTGATTGGGTACTGCAACAATATAGCAGAGATAAGCTTCATAAGCTGATTGATCAAAATATTGCAGATACTATAAGTCCTGAATCATACAAGATTTTTGTACAAATTGGTGTGAAATGTTTGGCTGATCATGGAGTTGATAGGCCTAGTATGGGTGATGTGTTGTGGCATTTGGAACATGCTTTACAACAACAGTTAGCTTCATCACATATTGATACTATACCTATAGATAACAACACAAATTCACATATTCATGCTACACCTATAGATAGCAACACAAATTCATATGCTATTCAACATGCAAATGAAATTGACAGAAATTATGATAACCTACATGGTGTTACAAGTGATGAGTCTGATAGCACAACTCCTAATTCTGATTTGTTTTCTCTGATTGGTAATTTCCAAGGAAGGTGA 2658 0.3657 MEEEENKEVHMKPSFNFFSIFILIIFLFTPSNSDSTTIDHSLSPYVNYLIDCGSSTKTQLIDGRIFKSDRETTSFLSTTEDIQVSVDFININLPPSLPPSSLPLYQTARVFTEQSSYTFYISKTGRLWIRLYFFPISNPSYNLTSFVFSVYTDHFVLLHEFSHSNNNSLVFKEYLVNVSDTRFSLKFIPKKKSFAFINAIEIVSAPDTLISDSATQVSPLGEFNGLTKSALQVSYRINVGGPTITPDGDTLSRTWEPDDSYNIFPQGSSNVSVPKKRIKYPQDSVVTVTPLIAPNSVYASGVQMKESRLLQPDFNLSWMVNVERSYSYLIRMHFCDIVSKSLDQLYFNVYINGIEVVEALDLSSETKALSTAVYKDFVLGSCNITNGSILIQVGPTYLQQSTTNAILNGFEVMKMSNSANSLDGFFSVDGKYKGPSVTSNVMKIVAIAGLVLAVISLLLLVVMYIRWLKRPLDWKESRGFSSWLLPLCPKSKKSCSANANAFDSPKNKHGGHDVHHSPRGTGRFFHFIELQRATDNFDEKRVIGYGGFGKVYLGTLDDGTNVAVKRGGGGSEQGINEFRTELKMLSKLRHRHLVSLIGFCDENSEMVLVYDYMSNGPFRSHLYNSNFSPLSWQKRLEICIGAARGLHYLHTGASQSIIHRDVKTTNILLDENYVAKVSDFGLSKAIQDKSQISTAVKGSFGYLDPEYYRSQQLTQKSDIYSFGVVLFEVLCARPVVSPTLPREQANLADWVLQQYSRDKLHKLIDQNIADTISPESYKIFVQIGVKCLADHGVDRPSMGDVLWHLEHALQQQLASSHIDTIPIDNNTNSHIHATPIDSNTNSYAIQHANEIDRNYDNLHGVTSDESDSTTPNSDLFSLIGNFQGR* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3949 885 SMART serkin_6 537 814 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3949 885 SUPERFAMILY Protein kinase-like (PK-like) 515 806 IPR011009 -
Mtr4g3949 885 Gene3D - 44 206 - -
Mtr4g3949 885 Gene3D - 230 417 - -
Mtr4g3949 885 Gene3D Transferase(Phosphotransferase) domain 1 613 828 - -
Mtr4g3949 885 ProSiteProfiles Protein kinase domain profile. 537 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3949 885 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 27 881 - -
Mtr4g3949 885 MobiDBLite consensus disorder prediction 498 517 - -
Mtr4g3949 885 Pfam Protein tyrosine and serine/threonine kinase 540 801 IPR001245 GO:0004672|GO:0006468
Mtr4g3949 885 Pfam Malectin-like domain 50 415 IPR024788 -
Mtr4g3949 885 PANTHER OS07G0166700 PROTEIN 27 881 IPR045272 GO:0004714|GO:0006468
Mtr4g3949 885 Gene3D Phosphorylase Kinase; domain 1 503 612 - -
Mtr4g3949 885 ProSitePatterns Protein kinases ATP-binding region signature. 543 565 IPR017441 GO:0005524
Mtr4g3949 885 CDD STKc_IRAK 543 806 - -
Mtr4g3949 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 657 669 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3949 Mtr-Chr4 53255084 53258267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3949 41 819 Receptor kinase-like Gene Family AT5G61350 58.291 0.0 915
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Mtr4g3949 Malectin_like 3.2e-36 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3949 - - mtr:MTR_4g109010 1729.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3949 4 53255084 53258267 Mtr4g3949 4 53255084 53258267 ECH