Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3944 ATGGATACTGAAGAACTTATTGATTTAAACAGTAAAGAGCTTAATTGTGGTGGAAATAATAGCAAGAGTGGTGATGGATTCATTGATAGGAGTAAAGTTAGGATTTTGCTGTGTGATAGTGATTCCAAGAGTTCAGAAGAGGTTTTTACTCTTCTTATTAATTGCTCTTATCAGGTTACGTCTGTAAAATCCGCACGGCAAGTGATTGATGCATTGAATGCGGAAGGACAATATATAGATATCATACTAGCGGAAGTTGACCTTCCAATCAAAAAGGGAATGAAGATGTTGAAGTACATAGCACGGGATAAAGAACTGCGCCGAATCCCTATTATAATGATGTCTGCACAAGATGAGGTATCAATTGTTGTTAAGTGCTTGAGGCTCGGAGCAGCAGACTATCTAGTAAAGCCTTTACGTACTAATGAACTATTAAATTTGTGGACCCACATGTGGAGAAGGAGACGCATGCTTGGACTTATAGAGAACAACATCTTGAATTATGATTTTGATCTGGTAGCATCAGACCCTAGTGATGCCAATACAAACAGTGCCACCTTCTTCTCTGATGACACAGACGACAAGTCCAAAAGAAGCAATAATCCCGAGGCTGGAATTTCAATCCAACAAGAACAGGCGGAAATTTCAATCCAACAAGAAGAGGCTAGTATTGCCACTGCTGCTGCTGTTATTGAGGAGCATCCATATGTTCATGTATCAGAATATCAGCCTGATGTACCTGGAATTAGTGATCGAAGAAGAACAGGTTCTTCAGCACCGCATCCGCCGTGCAACAGAGTTACAAATAGTAGCTTTGATGGTCCGAAGAAGAGTGAACTTAGAATTGGAGAATCATCAGCCTTTTTCACTTATGTCAAAGCAACAACAATGAAGAGAAACTTGGAAGAGATTGCTCATTTAGACAATAGCGGTACATTACTAGTGAGGGTGGAAGATATGAATCAAGCATGTTCTCAACAAGGGGGTAATGACCTTATAAGACATGAAAATGGAGAAACGATTGAAAGCCATTCACAAGATGACTTACCTAGAAGCAATAGTATCCCCGATTCTTTCTCTGTTGAGAGATCGTGTACCCCACCTGCATCAATGGAGGTTTCACAGCAAAATAGTAATCACAAGGAAAAACATCCACAAGGGGTGGTTCATCCAAGAAATGGAAGTTATGGTTCTGAGCTCAACCAATCGGGCATGCCTGCCCAACATGCTTATCCGTATTATATGCCAGGAGTTGCTAATCATGTTATGATGCAGTCAGCAACGCATATGTATCAAAAGAATATCCAGAACCTTCAGAGTCATGTTAGTTCATCTATGATTTCCCAGTACAATCAACTTCCCCAATGTCCACCTCATGCAACTGGGATGGCACCCTACCCATATTTTCCCATGAGTATTTGTTTACAAACCGGTCAGGTTTCTACAGTTCATCCATGGCCGTCATTAGGAAGTTCAACTTCATGTGAAGCAAACTTAAGAAAAGTTGATAGGAGAGAAGCAGCATTGATGAAGTTTAGACAGAAAAGAAAAGAGCGTTGCTTCGATAAGAAAATTAGGTACGTCAATCGGAAACAACTTGCAGAAAGGCGGCCTCGTGTTAGGGGACAGTTTGTCAGGAAGTTGAATGGTATTAATGTGGATCTAAATGGACAACCTGCTTCCACCGACTATGACGATGAGGATGAAGAGGAGGAAGAAAACAATGACACCAGAGATTCCTCTCCTAAGGATGCTTGA 1758 0.4096 MDTEELIDLNSKELNCGGNNSKSGDGFIDRSKVRILLCDSDSKSSEEVFTLLINCSYQVTSVKSARQVIDALNAEGQYIDIILAEVDLPIKKGMKMLKYIARDKELRRIPIIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRRMLGLIENNILNYDFDLVASDPSDANTNSATFFSDDTDDKSKRSNNPEAGISIQQEQAEISIQQEEASIATAAAVIEEHPYVHVSEYQPDVPGISDRRRTGSSAPHPPCNRVTNSSFDGPKKSELRIGESSAFFTYVKATTMKRNLEEIAHLDNSGTLLVRVEDMNQACSQQGGNDLIRHENGETIESHSQDDLPRSNSIPDSFSVERSCTPPASMEVSQQNSNHKEKHPQGVVHPRNGSYGSELNQSGMPAQHAYPYYMPGVANHVMMQSATHMYQKNIQNLQSHVSSSMISQYNQLPQCPPHATGMAPYPYFPMSICLQTGQVSTVHPWPSLGSSTSCEANLRKVDRREAALMKFRQKRKERCFDKKIRYVNRKQLAERRPRVRGQFVRKLNGINVDLNGQPASTDYDDEDEEEEENNDTRDSSPKDA* 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3944 585 PANTHER RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 2 570 - -
Mtr4g3944 585 MobiDBLite consensus disorder prediction 242 278 - -
Mtr4g3944 585 Gene3D - 33 236 - -
Mtr4g3944 585 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 570 IPR045279 GO:0009736
Mtr4g3944 585 ProSiteProfiles CCT domain profile. 505 547 IPR010402 GO:0005515
Mtr4g3944 585 MobiDBLite consensus disorder prediction 183 202 - -
Mtr4g3944 585 MobiDBLite consensus disorder prediction 347 376 - -
Mtr4g3944 585 MobiDBLite consensus disorder prediction 561 575 - -
Mtr4g3944 585 MobiDBLite consensus disorder prediction 552 585 - -
Mtr4g3944 585 MobiDBLite consensus disorder prediction 341 396 - -
Mtr4g3944 585 Pfam Response regulator receiver domain 35 146 IPR001789 GO:0000160
Mtr4g3944 585 SMART REC_2 33 148 IPR001789 GO:0000160
Mtr4g3944 585 SUPERFAMILY CheY-like 29 158 IPR011006 -
Mtr4g3944 585 Pfam CCT motif 505 547 IPR010402 GO:0005515
Mtr4g3944 585 MobiDBLite consensus disorder prediction 261 275 - -
Mtr4g3944 585 ProSiteProfiles Response regulatory domain profile. 34 152 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3944 Mtr-Chr4 53202143 53206898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3944 22 584 Response Regulator Gene Family AT5G61380 50.000 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Mtr4g3944 Response_reg 2e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3944 K12127 - gmx:100786522 885.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3944 4 53202143 53206898 Mtr4g3944 4 53202143 53206898 ECH