Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3941 ATGGAAACTGGTGGACGAAACGAAACACCCTTCTTGGGTTTTCGTTTTGTCTCCAAATTTCTATTATGCGCCGTATCTGGAACTCTCACCGCATGTTTTGCCTTTGCTGGGGCCCTTACAGGAGCTATAGCCGGTGCTTTAGCAGCTAAGGCTACCAAGAGTGGTTTTCTCCGGGGAGTTTCATTGGGTGCAATTGCCGGGGCTATACTCTCGGTGGAGGTGTTGGAAGCTTCCCGTGCTTATTGGTGTATGGAACAAACTGGTTCACGCGGCGCGTCTTCTATGGTTGGAGTTGCTAATAACACTGGCTATGATGAGTTTCATGATGTTCATAGCTTAGTATCATCCACAGGATTGTCGGGGGATTCATTGAATAAGCTACCGCACCATATGGTTTTGAAGGGCATGAAGGCAGAGGATACTTTCTGTGCAATATGTTTGCAGGACATTGAAGTTGGGGAAGTTGCGAGAAGCTTACCTCGTTGTGACCATACTTTTCACTTGATATGCGTGGACAAATGGCTTGTCAAGAATGATTCGTGTCCTATTTGCAGACAGAATGTGTAG 567 0.4656 METGGRNETPFLGFRFVSKFLLCAVSGTLTACFAFAGALTGAIAGALAAKATKSGFLRGVSLGAIAGAILSVEVLEASRAYWCMEQTGSRGASSMVGVANNTGYDEFHDVHSLVSSTGLSGDSLNKLPHHMVLKGMKAEDTFCAICLQDIEVGEVARSLPRCDHTFHLICVDKWLVKNDSCPICRQNV* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3941 188 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 99 187 - -
Mtr4g3941 188 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 97 - -
Mtr4g3941 188 SMART ring_2 143 184 IPR001841 -
Mtr4g3941 188 Pfam Ring finger domain 143 185 IPR001841 -
Mtr4g3941 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 188 IPR013083 -
Mtr4g3941 188 SUPERFAMILY RING/U-box 124 188 - -
Mtr4g3941 188 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Mtr4g3941 188 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 99 187 IPR044523 -
Mtr4g3941 188 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 13 97 IPR044523 -
Mtr4g3941 188 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3941 Mtr-Chr4 53176951 53180055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3941 17 188 C3H Transcription Factor Family AT1G74410 50.000 2.92e-57 178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3941 4 53176951 53180055 Mtr4g3941 4 53176951 53180055 ECH