Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3937 ATGGAAAACGTTTCAGTCTTATCAAATAAGGAAGATGAGAAGATGGATTTGCCTCCTGGATTTCGATTTCACCCAACTGATGAAGAGCTTATAAGTCATTACCTCTACAAAAAGGTTATTGATTCAAATTTCTCTGCAAGAGCCATTGGTGATGTAGACCTCAACAAGTCTGAACCTTGGGATTTACCATTTAAAGCAAAAATGGGAGAAAAAGAATGGTACTTTTTCTGTGTGAGAGACAGAAAATATCCAACTGGGTTGAGGACAAACAGAGCAACAGAAGCAGGTTATTGGAAAGCAACTGGGAAAGATAAAGAAATTTTCAAAGGGAAATCGTTGGTTGGTATGAAGAAAACTCTTGTTTTCTACAAAGGAAGAGCACCTAAAGGAGAAAAAAGTAATTGGGTCATGCATGAATATCGACTTGAGGGTAAATTCTCTGTTCACAATCTTCCAAAAGCTGCAAAGAATGAATGGGTGATTTGTAGGGTTTTTCAGAAGAGTTCAGCTGGGAAAAAAACACATATTTCTGGTATAATGAGGTTGGATTCACTTGGTAATGAATTTGGTTGTTCTGTTTTACCACCACTTACTGATTCGTCGAATTCAATTGGGAAAATCAAACAATTGAATGATTCAGCTTACGTGTCCTGCTTCTCCAACTCAATTGATGTTCAAAGAAACCAAGGAGGGATCTTTGATTCATTCAACAACTCAATTTATGGTATTTCTTCACATAATCAACTAGATTTTTTCCCAAGAATCTCATCTTCTAATGGTTCATTATACTCTAATAATCAAGCTGCGGTTAATTTGCAATATCCAAGTTCTGTTTGTGGTATGCAAGATCAAGCAATTTTAAGAGCTTTGTATGAAAACAATGGTTTCAAGACTGAGAGACAGCAACAAATTATGAGTGTGTCACAGGAAACTGATCTAACTACTGATATGAATGCTGAAACATGTTCTGTTGTGTCAAATTTGGATATTGGTAGAAGGACTTTTGAGAATAATCAGAATCGTCCACCACCTGCTTCTGTTGCAGCTGTTGATTTTGATGGTAATTTGTGGAATTACTAA 1080 0.3611 MENVSVLSNKEDEKMDLPPGFRFHPTDEELISHYLYKKVIDSNFSARAIGDVDLNKSEPWDLPFKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFKGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKAAKNEWVICRVFQKSSAGKKTHISGIMRLDSLGNEFGCSVLPPLTDSSNSIGKIKQLNDSAYVSCFSNSIDVQRNQGGIFDSFNNSIYGISSHNQLDFFPRISSSNGSLYSNNQAAVNLQYPSSVCGMQDQAILRALYENNGFKTERQQQIMSVSQETDLTTDMNAETCSVVSNLDIGRRTFENNQNRPPPASVAAVDFDGNLWNY* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3937 359 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Mtr4g3937 359 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 355 - -
Mtr4g3937 359 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 6 355 - -
Mtr4g3937 359 Gene3D NAC domain 26 171 IPR036093 GO:0003677|GO:0006355
Mtr4g3937 359 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Mtr4g3937 359 SUPERFAMILY NAC domain 12 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3937 Mtr-Chr4 53132818 53134628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3937 15 359 NAC Transcription Factor Family AT5G07680 57.514 3.33e-128 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mtr4g3937 NAM 5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3937 - - cam:101502392 630.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3937 4 53132818 53134628 Mtr3g0893 3 13257195 13259866 ECH
Mtr4g3937 4 53132818 53134628 Mtr4g3937 4 53132818 53134628 ECH