Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3929 ATGGAGAGTAAGCCACTTACTTGTTGTGACTGTGACCTTTTCCATCACAAAAATGAAAAGCCATTTTCATATAACTTCCAATTTCCTAACAGTGGAATCATTAGTGAGTATTTACTAATGAATGACAAATTTCCCATACACGATGATGGTTTGGAATTTGAGGAGCTTATGAAGTGTAATTCCCCTCATAACCCTTTATACATTGAACCAATGCCAAGCCTCGAAGGTTATCATCAAACCATGCCACATTCTCAATTTAAATTTTGGTTATATCTTCTGATTAATACTGTGGCTGCAGATGACTATGGAATTTCTTATGATGTGGAGAAAGGATTTGGTGACTGGAGAGAAATTATCAACGATGCAGCGTTTGGTTCTGACAAATTGTATTTATGTTACACTAATGAAAATAGTGGAAATGAAATTAAGAAAGAGGTCGTGGAGGTTAAGCCAGAAAGAGTAGAGAGGATTAGTGATGGTAATACAAAGAATTTGTCAAGGAAGATTATATCTCAGTATTTTTATATGCCAATAACACAAGCTGCAAGAGAACTCAATGTGGGCCTCACACATTTGAAAAAAAGATGTAGGGAATTGGGTATTCGTAGGTGGCCCCATAGAAAACTCATGAGCCTTCAAACCTTGATCAATAATATTCAGGAGCTAGGGAAAGAGGATGGTTTACGTAGTGATGAAAAGTTTATGGATATCGAGAAATTGGAAGAGGAAATGAAGCTGGTGGAGGAGATGCCAGATATGCAATTGCAAGATCATACCAAAAGGCTTAGACAACATTGTTTTAAGGCCAATTACAAGAAAAGAAAGCTTATGGATCAGCTGATCATGTTTTAA 852 0.365 MESKPLTCCDCDLFHHKNEKPFSYNFQFPNSGIISEYLLMNDKFPIHDDGLEFEELMKCNSPHNPLYIEPMPSLEGYHQTMPHSQFKFWLYLLINTVAADDYGISYDVEKGFGDWREIINDAAFGSDKLYLCYTNENSGNEIKKEVVEVKPERVERISDGNTKNLSRKIISQYFYMPITQAARELNVGLTHLKKRCRELGIRRWPHRKLMSLQTLINNIQELGKEDGLRSDEKFMDIEKLEEEMKLVEEMPDMQLQDHTKRLRQHCFKANYKKRKLMDQLIMF* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3929 283 Pfam RWP-RK domain 164 212 IPR003035 -
Mtr4g3929 283 Coils Coil 230 250 - -
Mtr4g3929 283 PANTHER PROTEIN RKD1-RELATED 35 278 - -
Mtr4g3929 283 ProSiteProfiles RWP-RK domain profile. 144 233 IPR003035 -
Mtr4g3929 283 PANTHER PROTEIN RKD4 35 278 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3929 Mtr-Chr4 53048682 53049747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3929 162 275 AtRKD Transcription Factor Family AT1G18790 63.478 6.88e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mtr4g3929 RWP-RK 5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3929 - - mtr:MTR_0140s0010 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3929 4 53048682 53049747 Mtr4g3929 4 53048682 53049747 ECH
Mtr4g3929 4 53048682 53049747 Mtr3g0912 3 13494376 13496214 PCT