Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3927 ATGATGGGAAGGCCACCATGTTGTGAGAAACTAGGGATTAAAAAAGGACCTTGGACTCCTGAAGAAGATATCATCTTAGTTTCTTACATTCAACAACATGGACCTGGGAATTGGAGATCTGTTCCAACCAATACTGGTTTGATGAGATGTAGTAAGAGCTGCAGACTTAGATGGACAAACTATCTTCGACCAGGTATCAAAAGAGGTAACTTCACAGATCATGAAGAGAAAATGATTGTTCACCTCCAAGCTCTTTTGGGCAACAGATGGGCTGCTATAGCTTCATATCTTCCACAAAGGACAGACAATGACATAAAAAATTATTGGAATACACATTTAAAGAGGAAGATGAACAAAGATCAAAGTAGTACTGATGAAGGTGTTGATCAAGAATCTCGTTCGCAGCTGCCGAATAAAGGTCAATGGGAAAGAAGGCTACAAACAGATATTCATATGGCCAAACAAGCCTTATCTGAGGCTTTGTCCCTTCAACATAACCCTACAACCCTTGGTACTTTGCCTGATCAGATGAAACCCTCATCAAGTTTTTCTCATTCTCATGAACATCCACCAAACCTGAATATTCCATCTCCATATGCATCAAGCTATGAAAACATTTCTAGATTGATGGAAACTTGGATGAAATCACCTAACTCATCAGCTGAAACGAATTCCTCATCAATATTCAGCAACATGCAGGGATCAAGTTGTAGTGAAGGAGCACAAAGCACAACACAAGATCATCATGGCCTTAACTCATCCAAATCTGATTATGCTTCTCGATTTAGGTCATCTCATGAAGGAAACAACAGCTTCAACTTGAACACAAAAGAGGGTCTCTTCTTCCACCAAGAGGAAAGGATTAATATTAAAGCAAACATGGAAACGCATGTTCCTCTTACTTTGCTTGAAAAATGGCTTTTTGAAGATGGGGGAGCAAGTCATGAGTGCCATGAAGAGCTTATAAACATGTCATTGGAGGGAACTACTTCAGATTTCTTTTAG 1005 0.395 MMGRPPCCEKLGIKKGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKRKMNKDQSSTDEGVDQESRSQLPNKGQWERRLQTDIHMAKQALSEALSLQHNPTTLGTLPDQMKPSSSFSHSHEHPPNLNIPSPYASSYENISRLMETWMKSPNSSAETNSSSIFSNMQGSSCSEGAQSTTQDHHGLNSSKSDYASRFRSSHEGNNSFNLNTKEGLFFHQEERINIKANMETHVPLTLLEKWLFEDGGASHECHEELINMSLEGTTSDFF* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3927 334 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Mtr4g3927 334 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Mtr4g3927 334 MobiDBLite consensus disorder prediction 166 198 - -
Mtr4g3927 334 MobiDBLite consensus disorder prediction 116 142 - -
Mtr4g3927 334 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 2 322 - -
Mtr4g3927 334 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Mtr4g3927 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Mtr4g3927 334 MobiDBLite consensus disorder prediction 128 142 - -
Mtr4g3927 334 Gene3D - 70 145 - -
Mtr4g3927 334 MobiDBLite consensus disorder prediction 216 270 - -
Mtr4g3927 334 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 322 - -
Mtr4g3927 334 SMART sant 67 115 IPR001005 -
Mtr4g3927 334 SMART sant 14 64 IPR001005 -
Mtr4g3927 334 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Mtr4g3927 334 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Mtr4g3927 334 CDD SANT 70 113 IPR001005 -
Mtr4g3927 334 Gene3D - 14 67 - -
Mtr4g3927 334 CDD SANT 17 62 IPR001005 -
Mtr4g3927 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3927 Mtr-Chr4 53004746 53006550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3927 2 333 MYB Transcription Factor Family AT5G62470 50.802 5.50e-104 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g3927 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3927 K09422 - pvy:116114586 386.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3927 4 53004746 53006550 Mtr4g3927 4 53004746 53006550 ECH