Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3921 ATGGATGGAGGAGATGATCTCCACCACCATCACCACCACCAGCACCATCAACACCACCACCAACACCAACAACAACAAAGACAAAATTTTCCATTTCAACTTCTTGAGAAGAAAGAAGATAACCAAGAAGCAGCATCATGTTCAACTTCTTCTCCATATCCATCCCTAGCAATCTCACCAACAGAACCAAGTACATCAAATTCAAACCGATCCAACCAACTAGTCCCAGCATCAACACCAACAACCTCTGACCCTGCCAACAAAAAACCTCCTCCGAAAAGAACTTCCACCAAAGACCGTCATACCAAAGTAGAAGGCCGTGGCCGCCGCATCCGAATGCCGGCACTTTGTGCTGCTAGAGTTTTTCAGCTTACACGCGAACTTGGCCATAAATCTGATGGTGAAACCATTGAATGGCTTCTTCAACAAGCTGAACCAGCTGTTATAGCCGCCACTGGTACTGGAACTATACCTGCTAACTTCACATCTCTCAATATCTCACTTCGTAGCTCAGGCTCATCCATGTCTGTTCCATCTCAGCTAAGATCTTCTTACTTCAACCCGAATTTCTCACTTCAACAACGAAGAACTCTTTTTCCTGGAATTGGTTTATCTCCTTCAGATAACAACAGCAACAACAACACTTCAATGCTTTTGAATTTCCAATCAAATAACCTAACAAATATGTTGCAGGCTAAACAAGAGGTTCGAGATGGAAACACAAACTCAAACGCTAACGCGAACGCTCCTTCTTCATCAACCACGTTAGATTTATCTGAAACAAGTGGAGAAGAATCCATGGGAGGAAGAAAAAGAAGAACTAGCAGTGGTGGCAGTGAGCAAGATTTATCATCATTACAACATCAAATGGGGAGTTATCTGATGCAATCAAGTGCAGGTTCAATTCCAGCAAGTCATACTCAGATTCCGGCAAATATATGGATGGTTGCAAATTCTAATAACCAAATAATGAGTGGTGGTGATCCTATATGGACTTTTCCGTCAGTGAATAATAGTGCTGCTGCTTTGTATAGAGGAGCAGTTTCAACTAGTGGTTTGCATTTTATGAATTTTCCACAACCTATGGCTTTGTTACCAGGTCAACAATTAGGTAATTCTTCCGGTGGTGGTGGTGGTGGTGGGAATATCAATATGAATATGAATATGAATGAAGGACATTTGAGTATGCTTGCTGGTCTTAGTCCTTATCGTCCGGTTTCCGATCATCATCAACAACACCATCAACCAAGTGGATCACAATCACATCATCATCGCAGTGGTAGCCATGAACACGATGATCGACATGATAATTAA 1314 0.4216 MDGGDDLHHHHHHQHHQHHHQHQQQQRQNFPFQLLEKKEDNQEAASCSTSSPYPSLAISPTEPSTSNSNRSNQLVPASTPTTSDPANKKPPPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSLQQRRTLFPGIGLSPSDNNSNNNTSMLLNFQSNNLTNMLQAKQEVRDGNTNSNANANAPSSSTTLDLSETSGEESMGGRKRRTSSGGSEQDLSSLQHQMGSYLMQSSAGSIPASHTQIPANIWMVANSNNQIMSGGDPIWTFPSVNNSAAALYRGAVSTSGLHFMNFPQPMALLPGQQLGNSSGGGGGGGNINMNMNMNEGHLSMLAGLSPYRPVSDHHQQHHQPSGSQSHHHRSGSHEHDDRHDN* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3921 437 MobiDBLite consensus disorder prediction 237 284 - -
Mtr4g3921 437 Pfam TCP family transcription factor 95 251 IPR017887 -
Mtr4g3921 437 ProSiteProfiles TCP domain profile. 97 151 IPR017887 -
Mtr4g3921 437 PANTHER TRANSCRIPTION FACTOR TCP14-LIKE 18 436 - -
Mtr4g3921 437 MobiDBLite consensus disorder prediction 423 437 - -
Mtr4g3921 437 MobiDBLite consensus disorder prediction 91 108 - -
Mtr4g3921 437 MobiDBLite consensus disorder prediction 1 108 - -
Mtr4g3921 437 MobiDBLite consensus disorder prediction 399 437 - -
Mtr4g3921 437 MobiDBLite consensus disorder prediction 237 262 - -
Mtr4g3921 437 MobiDBLite consensus disorder prediction 44 90 - -
Mtr4g3921 437 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 18 436 IPR005333 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3921 Mtr-Chr4 52947652 52949811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3921 86 369 TCP Transcription Factor Family AT3G47620 49.275 4.41e-65 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Mtr4g3921 TCP 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3921 - - cam:101512124 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3921 4 52947652 52949811 Mtr4g3921 4 52947652 52949811 ECH
Mtr5g1596 5 17339949 17341742 Mtr4g3921 4 52947652 52949811 PCT