Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3920 ATGGGATCGGAGAGTGTTGCTCCTATGATTGAGCCATCAAATAACAGGTCTGATCCTGGTACAATGAAGCAAGGGAAAGTCCCTAAGAGAATTCACAAGGCCGAAAGGGAGAAAATGAAGCGTGAACATTTGAACGAACTCTTCCTTGATCTTGCCAATGCTCTTGATCTCAGTGAGCCGAACAATGGAAAGGCTTCAATATTGATCGAAGCTTCTAGACTGCTAAAAGACTTGCTCTGTCAGATCCAGTCCCTCAAGAAAGAGAATGTCTCTTTATTGTCTGAATCTCATTATGTGACCATGGAGAAAAATGAGCTAAAGGAGGAGAATAGTAGCCTAGAAACTCAAATTGAGAAGCTTCAAGGCGAGATACAGGCAAGAATAGCTCAATCTAAACCTGACTTGAATGCGCCTCCTCAATTAGAGCTTGAGTCACCAGAGCAGACAACTTTTTCAGGACAGAGTTTCCAATTGCCTACCGTAGATCCTACCTTGCAGCAAGGACCTACTGTTTTAGTCGTCCCCTTTCGTCCCGATCTTCAAGCTGCTTACCCAGCTCCTACTGAGATCACGCCAAACCCTCCACTTGTTATCAGTAAACCTCATGCCAGGTATCCCACACCAGCAGATTCATGGCCATCACAACTGCTTGGAGAGCAACCAACTTCTAGCTAA 675 0.4489 MGSESVAPMIEPSNNRSDPGTMKQGKVPKRIHKAEREKMKREHLNELFLDLANALDLSEPNNGKASILIEASRLLKDLLCQIQSLKKENVSLLSESHYVTMEKNELKEENSSLETQIEKLQGEIQARIAQSKPDLNAPPQLELESPEQTTFSGQSFQLPTVDPTLQQGPTVLVVPFRPDLQAAYPAPTEITPNPPLVISKPHARYPTPADSWPSQLLGEQPTSS* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3920 224 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 78 IPR011598 GO:0046983
Mtr4g3920 224 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 94 IPR036638 GO:0046983
Mtr4g3920 224 Coils Coil 103 130 - -
Mtr4g3920 224 MobiDBLite consensus disorder prediction 184 224 - -
Mtr4g3920 224 Coils Coil 68 95 - -
Mtr4g3920 224 MobiDBLite consensus disorder prediction 1 31 - -
Mtr4g3920 224 Gene3D - 25 103 IPR036638 GO:0046983
Mtr4g3920 224 PANTHER TRANSCRIPTION FACTOR BHLH47 6 223 - -
Mtr4g3920 224 PANTHER TRANSCRIPTION FACTOR BHLH47 6 223 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3920 22 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 51.613 2.00e-61 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3920 - - mtr:MTR_4g108360 445.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3920 4 52936705 52938913 Mtr4g3920 4 52936705 52938913 ECH