Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3917 ATGGTTCACGTTGCGTTTTACCGAAACTATGGCAAAACTTTCAAGAAGCCCCGTCGTCCATACGAGAAGGAGCGTTTGGATGCTGAGTTGAAGCTCGTCGGAGAGTATGGTCTTCGCTGTAAGAGAGAGCTGTGGAGGGTTCAATACGCTCTTAGCCGTATCCGTAACAATGCTAGAACACTTTTGACACTGGATGAAAAGAACCCTCGTCGGATCTTCGAGGGTGAAGCTCTTTTGAGGAGGATGTTTAAGCATGGCTTGCTTGATGAAACTCAGAACAAGCTCGATTATGTCTTGGCTCTCACTGTTGAGAATTTTCTCGAGTGTCGTCTTCAGACTCTTTGTGTTTAA 351 0.4587 MVHVAFYRNYGKTFKKPRRPYEKERLDAELKLVGEYGLRCKRELWRVQYALSRIRNNARTLLTLDEKNPRRIFEGEALLRRMFKHGLLDETQNKLDYVLALTVENFLECRLQTLCV* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3917 116 PANTHER 30S 40S RIBOSOMAL PROTEIN 5 114 IPR022801 -
Mtr4g3917 116 SMART Ribosomal_S4_2 8 108 IPR001912 GO:0019843
Mtr4g3917 116 TIGRFAM uS4_arch: ribosomal protein uS4 11 114 IPR005710 GO:0003735|GO:0006412|GO:0015935
Mtr4g3917 116 Pfam Ribosomal protein S4/S9 N-terminal domain 8 108 IPR001912 GO:0019843
Mtr4g3917 116 PANTHER 40S RIBOSOMAL PROTEIN S9 5 114 - -
Mtr4g3917 116 SUPERFAMILY Alpha-L RNA-binding motif 12 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3917 Mtr-Chr4 52918949 52919440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3917 1 115 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 90.435 1.25e-71 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3917 K02997 - gmx:100810569 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3917 4 52918949 52919440 Mtr4g3917 4 52918949 52919440 ECH