Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3915 ATGGGAAATTGCTTTGGAAGTCGTTACAAGGTTCATGAACCTTTCTCCCAATCCAATTCTGAGGTTACAAAAGTTCCTTTTAGAAGCACTCAATTGTTGGTACACTCAAGTGCAATAGTACATGGACACAATGATGGAGGTAAACCTGAGATTCTTCCAACTCCAAGATCTGAAGGGGATATACTTTCTTCTCCACATTTAAAAGCCTTCACATTTAAGGATCTTAGGAATGCCACTAAAAATTTCAGTAATGATAGTTTAATTGGACAAGGAGGGTTTGGTTATGTTTATAAAGGGTGGATTGATGCTCAATCACTTAAGGCTGCAAGGCCTGGATGTGGAACTGTTATAGCTGTCAAGAAGCTCAAGCCTGAAGGTTTTCAAGGCCATAAGGAGTGGCTGTCTGAACTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAAACTTACTGGATACTGCTTGGATGGGGATAACAGGCTTCTAGTCTACGAGTACTTGCCGAATGGAAGCTTGGAAAAACATCTATTTAGTAGAAAGGGCACACAACTACTTCCTTGGGCAACAAGAATCAAAGTTGCTATTGGGGCTGCTCGAGGTCTCACCTTCCTTCATGACTCTAATCAACAAATTATCTACCGTGATTTCAAGGCGTCTAATATTTTATTAGACTCGGAATTTAACGCAAAACTGTCAGACTTTGGATTGGCCAAAGCAGGGCCCACTGGCGATCGCTCTCATGTTTCTACTCAAGTCCTAGGCACTCAAGGCTATGCTGCTCCTGAATATATTGCCACTGGTCGGTTGACAACAAGGTGCGATGTCTATAGCTTCGGAGTTGTGCTATTGGAACTACTATCAGGGCGCAATGCTGTTGATAAAACAAAATCAGGAGCGGAACATAATCTGGTAGATTGGGCAAGACCATACTTGGGTGATAGAAGAAAGTTGTTTCGGATTATGGACACAAGATTACAAGGGCAGTATCCACAAAGGGCGGCTTATACAGCTGCAATTCTTGCGTTACAATGTATTAGTGAGGCCAAATTTAGACCACAAATGTCTGAGGTTTTGACGACTTTGGAAAACTTGCCAGTCATCAGACATTCAGCTAGTCCTTCTAGATTCGAGGAGAAACCGTTCCCAGGTCCAATAAGAGAAAGAATCTGA 1173 0.4211 MGNCFGSRYKVHEPFSQSNSEVTKVPFRSTQLLVHSSAIVHGHNDGGKPEILPTPRSEGDILSSPHLKAFTFKDLRNATKNFSNDSLIGQGGFGYVYKGWIDAQSLKAARPGCGTVIAVKKLKPEGFQGHKEWLSELNYLGQLHHPNLVKLTGYCLDGDNRLLVYEYLPNGSLEKHLFSRKGTQLLPWATRIKVAIGAARGLTFLHDSNQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTGDRSHVSTQVLGTQGYAAPEYIATGRLTTRCDVYSFGVVLLELLSGRNAVDKTKSGAEHNLVDWARPYLGDRRKLFRIMDTRLQGQYPQRAAYTAAILALQCISEAKFRPQMSEVLTTLENLPVIRHSASPSRFEEKPFPGPIRERI* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3915 390 SUPERFAMILY Protein kinase-like (PK-like) 66 367 IPR011009 -
Mtr4g3915 390 CDD STKc_IRAK 88 365 - -
Mtr4g3915 390 ProSiteProfiles Protein kinase domain profile. 82 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3915 390 PANTHER BNAC02G17010D PROTEIN 25 373 - -
Mtr4g3915 390 PANTHER OS01G0588500 PROTEIN-RELATED 25 373 - -
Mtr4g3915 390 Gene3D Transferase(Phosphotransferase) domain 1 168 375 - -
Mtr4g3915 390 Gene3D Phosphorylase Kinase; domain 1 54 167 - -
Mtr4g3915 390 ProSitePatterns Protein kinases ATP-binding region signature. 88 121 IPR017441 GO:0005524
Mtr4g3915 390 Pfam Protein tyrosine and serine/threonine kinase 86 358 IPR001245 GO:0004672|GO:0006468
Mtr4g3915 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3915 Mtr-Chr4 52898941 52902868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3915 3 362 Glycoside Hydrolase AT3G07070 46.216 5.79e-105 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Mtr4g3915 PK_Tyr_Ser-Thr 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3915 - - gmx:100791844 594.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3915 4 52898941 52902868 Mtr4g3915 4 52898941 52902868 ECH
Mtr5g1578 5 17012300 17015852 Mtr4g3915 4 52898941 52902868 PCT