Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3911 ATGTCAAATTCTTCCAGCTTTTGTACTCAAGCAAACGCTCTTCTCAGAAAGAATTTAACCTTCCAGAAACGGAACGTGAAGACAAATATTCGGTTGATTCTGTTACCGTTGATACTATGTGTTTTGCTTGTTGTTCTTCAACATTTAATAGACTCTCTATTGGATACACCGGATTTTAAATGTGGTTGTGCATGTCCTAACAAAAGAACAACATGTAACGATTCGGAGAAGGTTTGTGGGGTCCAGTATTCTAATCAGAATCAACTTCTAACATGTCCTGTTCCTCATCCACCTGAATGGCCTCCTCTCTTGCAACTTCCTACTGTGTTGTGCAAGGAAAATGCTTCCTGTCGTTTTAACATGCTTTTCACCGCCGACAATCACTCCTTTGCACAGAGCGTGACTGACAATATGTTCCCAAGTGCCCCTACTGTGGATTACGCTGATATCATGGGTAGTTTGTCATCAAATGTGCTGGGATCTCAATCATATCCTGAGGACAACAATTTTCTTGAACCAGCTTTTATGTCGGGTCTTCCCATTTTTTATCTACAATCTCAGTGCCCTAAGAACAACTCTGGATTCTCATTTCCTTACCAGATGGCAGGCATTACTTCACAACAAGAAATCAGATGTGGTCAAGGTATAAATCTTTGGCGTAACAGTTCTTCTGATATCAACAATGAGTTATATAAAGGACAGACCAATGAGATCGCTTCAGCTTTTGATTTTCTAAATTCAAATGAGGATGGATTCGACATTGTTGTATGGTACAAGTCAGTCTTCAGTCGTGGCATACATTCTCCTTCAACTACATTGTTGCGGATTCCTCGTTCTGTAAATCTGATATCAAATGCCTACTTGCAGTTTCTGCGTGGACCCGGTACCAAAATATTATTTGAGTTTGTAAAGGATATGCCAAAACCTGAGACCGTATTTAGAATTGAGTTAGCTTCTCTCCTGGGCGGTCTGTTCTTTACTTGGGTCGTCCTGCAACTTTTTCCGGTTATTCTGACATCACTGGTTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGACGGGCCATATTGGTTGATTTCATATGGATATTTTCTTGCCTTATCTGTGATCTACATATTGTGTTTCGTGATATTCGGCTCAGTCTTAGGTAAGAATATAACTATTTCATTCTCTGTTCTTGGCATTTTCTCGTTCTGTCTAATGCTGCTGATTTCCTTTTCAGGATTAAAATTCTTCACCTTGAATGACTACAGCATCCAATTCGTGTTTTATTTCATCTATGTAAACTTACAAATTTCAACGGCATTTCTGCTGTCTTCCTTTTTTTCAAATGTTAAGACCGCTACAGTAACCGCATATTTAGTCGTCTTTGGAACCGGGCTATTAGCCTGCTTTCTTTTCCAAAATTTTGTTGAAGCTACATCATTTCCAAGAGGATGGATCATTTGTATGGAGTTGTATCCCGGGTTTTCTTTATATCGTGGGTTATATGAATTTGCACAGTCTGCTGCCACCATTTCTAGTAATTCGGGGACTGGTGGTATGCTGTGGCAGGATCTGAACGATAGCACCAATGGCATGAAAGAGGTCTTAATTATCATGCTTGTTGAGTGGATAGTAGTGCTTTTTATTGCTTATTACATCGATCAAGTATTGTCGACAGGAAGTGGAAAAAGTCCTCTTTTCTTCTTGAAAAGATTTCAGAAAAAACCTCCATCATTCGAGAAGCTCAGTATTCAAAGGCAGGGGTCAAAAGTTTTGGTACAGTTGGAGAAAGAAGATGTCATCCAAGAGAGGGAGAAGGTGGAGCAGTTGCTTCTTGAACCAACCATTAATCATGCAATTGTTTGCAACGACCTAAAAAAGTTCTATCCAGGAAGGGATGGAAATCCAGGGAAATTTGCAGTGGGAGAGTTGTTCCTTGCTGTGCCTCGAGGGGAATGCTTTGGTATGCTTGGTCCTAATGGTGCTGGAAAGACTTCTTTCATTAGTATGATGATTGGTCTGACAAAGCCAACATCTGGTGCGGCATATGTTGAAGGCTTGGACATAAGAACTCATATGGATGGAATATATACTAGCATGGGAGTCTGCCCACAGCACGACTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGCAGACTGAAAAATCTTAAAGGTTCAATCTTGACTCAAGCAGTAGAAGAATCTTTGAAGAATTTAAACCTTTTCCATGGAGGGGTTGCTGATAAAAAAGCTGGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGACCCCAAAGTTGTTTATATGGATGAACCAAGTACTGGATTAGACCCTGCTTCAAGGAAATGCCTATGGAATGTTATCAAGCTTGCGAAACAGGATCGTGCAATCATTCTGACCACACATTCTATGGAAGAGGCAGAAGCCTTATGTGATCGATTAGGAATTTTTGTCGACGGTAGCTTGCAGTGCGTAGGAAATCCAAAGGAGCTGAAAGGAAGATATGGAGGAACTTATGTGTTCACAATGACAACATCTTCTGATCACGAGAAGGATGTCGAGAACATGATACGGCGTCTCACCCCAAATGCCAACAGGATATACCGTCTCTCTGGCACTCAGAAGTTCGAGCTGCCAAAAAAGGAAGTTAAAATAGCGAATGTATTCCAAGCTGTTGAAGTTGCAAAAAGAAACTTCACTGTTTTTGCATGGGGTTTAGCCGACACCACATTAGAAGATGTCTTTATTAAGATAATTTGCTTTGATGATGACGTAAACAACAAGTATAACAACCATTCAAGTCTGCTTTTTCTATTAGCTATATTTCATTTAGTGTAA 2883 0.4017 MSNSSSFCTQANALLRKNLTFQKRNVKTNIRLILLPLILCVLLVVLQHLIDSLLDTPDFKCGCACPNKRTTCNDSEKVCGVQYSNQNQLLTCPVPHPPEWPPLLQLPTVLCKENASCRFNMLFTADNHSFAQSVTDNMFPSAPTVDYADIMGSLSSNVLGSQSYPEDNNFLEPAFMSGLPIFYLQSQCPKNNSGFSFPYQMAGITSQQEIRCGQGINLWRNSSSDINNELYKGQTNEIASAFDFLNSNEDGFDIVVWYKSVFSRGIHSPSTTLLRIPRSVNLISNAYLQFLRGPGTKILFEFVKDMPKPETVFRIELASLLGGLFFTWVVLQLFPVILTSLVYEKQQKLRIMMKMHGLGDGPYWLISYGYFLALSVIYILCFVIFGSVLGKNITISFSVLGIFSFCLMLLISFSGLKFFTLNDYSIQFVFYFIYVNLQISTAFLLSSFFSNVKTATVTAYLVVFGTGLLACFLFQNFVEATSFPRGWIICMELYPGFSLYRGLYEFAQSAATISSNSGTGGMLWQDLNDSTNGMKEVLIIMLVEWIVVLFIAYYIDQVLSTGSGKSPLFFLKRFQKKPPSFEKLSIQRQGSKVLVQLEKEDVIQEREKVEQLLLEPTINHAIVCNDLKKFYPGRDGNPGKFAVGELFLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPTSGAAYVEGLDIRTHMDGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLKGSILTQAVEESLKNLNLFHGGVADKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKCLWNVIKLAKQDRAIILTTHSMEEAEALCDRLGIFVDGSLQCVGNPKELKGRYGGTYVFTMTTSSDHEKDVENMIRRLTPNANRIYRLSGTQKFELPKKEVKIANVFQAVEVAKRNFTVFAWGLADTTLEDVFIKIICFDDDVNNKYNNHSSLLFLLAIFHLV* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3911 960 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 6 393 - -
Mtr4g3911 960 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 402 934 - -
Mtr4g3911 960 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 6 393 IPR026082 GO:0016021|GO:0055085|GO:0140359
Mtr4g3911 960 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 402 934 IPR026082 GO:0016021|GO:0055085|GO:0140359
Mtr4g3911 960 Gene3D - 614 884 IPR027417 -
Mtr4g3911 960 Pfam ABC transporter 648 788 IPR003439 GO:0005524
Mtr4g3911 960 ProSitePatterns ABC transporters family signature. 761 775 IPR017871 GO:0005524
Mtr4g3911 960 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 622 859 IPR003439 GO:0005524
Mtr4g3911 960 CDD ABC_subfamily_A 622 847 - -
Mtr4g3911 960 SMART AAA_5 652 835 IPR003593 -
Mtr4g3911 960 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 621 850 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3911 Mtr-Chr4 52846312 52856045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3911 631 870 Calmodulin-binding Proteins AT2G36910 23.200 5.09e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3911 - - gmx:100805474 1306.97