Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3909 ATGGTAAATCCTGATCCTTCCCCTATCAGCTTCTGTACTCAAGCAAACGCACTTCTCAGGAAGAATTTAACTTTCCAGAAACGGAACCTGAAGACAAACATTCGGTTGATTCTGTTCCCTATGATCTTTTGCATTTTGCTGGTTCTACTTCAAAGTATAATGGACACTTTATTGGATAAACCCAAATACAAATGTGGCTGCATCTGTGCCAACAATAATAAAATAAAATGTGACGACTCAGAGAAGGTTTGTGGGATTCAGTATTCTGATCAGACTCAAGTTGTAACCTGTGCTATTCCTAATCCACCTGAATGGCCTCCTCTCTTGCAACTTCCCGCTCTCTCATGCAATACAACTGCCTCCTGTTATTTTACCATGCTCTTTACTGCCAACAATCACTCCTTTGGACAAAGTGTGTCTAAAAATATGTTCCCAAGTGCGTTAACTATGAATGACTATGATATCATGGCGAGTTTGGCACCAAATGTGCTGGGATCTGGAACAAAGCCTACGGATAACAATTTTCATGAAACTGCTTTTACTCCGGAGTATCCCATTTTTAATCTACAAACTCAGTGCCCTCAAAACAACTCTGGATTCTTATTTCCCTACCAAATAGCAGGCACTACTGCGCAACAAGAAATCAAATGTGCTCGAGGTATATATTCATGGCGTAACAGTTCTTCTGATATCAACAAAGAGTTATATCAAACTTATCAAAGAGGTAACCCAAAACGACGGATCAATAACATAGTTTCAGTTTTCGATTTTCTCAATTCAAATGAGGATGGATTCAATGTCACTGTACGGTTCAACGCAACAACCAAGGGTGCCGATATTAATCATCTTAATGCAATGTTGCGGATTCCCCGTTCCGTAAATATGATATCAAATGCTTACCTGCAGTTTCTGCTTGGACCCAGCACCAAAATCTTATTTGAGTTTGTAAAGGAAATGCCTAAGTCTGAGACCCCAATTAGGATTGAGATAGCTACTCTCCTGGGCAGTCTGTTCTTTACATGGGTTGTCCTGCAACTTTTTCCAGTTGTTTTGACATCACTGGTTTATGAGAAGCAACAAAAATTAAGAATCATGATGAAAATGCATGGTCTTGGTGATGGGCCATATTGGATGATTACATATGGTTATTTTCTTGCCTTATCAGCGATATACATGTTGTGTTTTGTGATATTCGGCTCAGTCTTGGGATTAAAATTCTTCACCTTGAATGACTACAGCATCCAATTTGTGTTCTATTTCATCTATATAAACTTACAAATTTCAACGGCATTTCTGCTGTCTTCCTTTTTTGCAAATGTTAGGACCGCTACAGTAACCGCATATATAGGTGTCTTTGGAACTGGGCTATTAGGCGGCTTTCTTTTCCAATTTTTTGTGCAAGAAACATCATTTCCAAGAGGCTGGATCATTTGTATGGAATTGTATCCTGGGTTTGCTTTATATCGTGGGTTGTATGAGTTTGCACAGTTTTCCTCCAGTCTCAGTAATTTAAGGACTGATGGTATGCGGTGGAAGGATCTGAGTGATGGCGTCAATGGCATGAAAGAAGTCTTAATTATCATGTCTGCTGAGTGGATAGTAGTGCTTTTAGTTGCTTATTACATCGACCAAGTATTGTCAACAGGAAGTGGGAAAGGTCCTCTATTCTTCTTGAAAGGATTTCAGATAAAACTACTTCCATCATTGAAAAAGCCCAGTATTCAAAGGCAAGGGTCAAAAGTTTTTGCTCAGATGGAGAAACCTGATGTCATCCAAGAGAGGGAGAAGGTGAAGCAGCTGCTGCATGAACCAACCATTAATCATGCAATTGTTTGTGACAACATAAAAAAATTCTATCCAGGAAGGGATGGAAATCCAGGGAAATTTGCAGTGAGAGGATTGTTCCTTGCTGTTCCTCGAGGGGAATGCTTCGGTATGCTTGGTCCTAATGGTGCTGGGAAGACTTCTTTTATCAGTATGATGATTGGTCTCACAAAGCCAGCATCTGGCGCGGCATATGTTCAAGGCCTGGACATTGGAACTCATATGAACGGAATATATACTAGCATGGGAGTATGCCCACAGCACGACTTGCTGTGGGAAAGCTTGACAGGTAGAGAGCACCTACTTTTTTATGGAAGACTTAAAAACCTTACAGGTTCAATCTTGACTCAAGCAGTAGAAGAATCTTTGAAGAGTTTGAACCTTTACCATGGAGGGATTGCTGATAAACAAGCTGGAAAATACAGTGGAGGGATGAAGAGGAGGCTTAGTGTTGCAATTTCATTGATTGGGGACCCCAGAATTGTTTATTTGGATGAGCCAAGTACTGGATTAGACCCTGCTTCAAGGAAATGGCTTTGGAATGTTATCAAGATTGCGAAACTGGACCGTGCAATCATTTTGACTACACATTCTATGGAAGAGGCAGATGCCTTATGTGATCGATTAGGAATATTTGTAAATGGTAGCTTGCAATGCATAGGAAATCCAAAGGAGCTGAAAGGCAGATATGGAGGAACTTATTTGTTCACAATGACAACATCTTCCGATCACGAGAAGGATGTCGAGAACATTGTACAACGCCTCACCCCAAATGCCAACAAGATATACCATCTCTCTGGTACTCTGAAATTTGAGCTGCCAAAAGAGGATGTTAAAATAGCAAATGTATTTCAAGCTGTTGAAGTTGCAAAAAGAAACTTCACCGTTATTGCATGGGGTTTATCTGACACAACATTGGAAGATGTCTTCATTAAGGTAGCACGTGAGGCTCAAGCATTTGATACATTGCAATAA 2799 0.4023 MVNPDPSPISFCTQANALLRKNLTFQKRNLKTNIRLILFPMIFCILLVLLQSIMDTLLDKPKYKCGCICANNNKIKCDDSEKVCGIQYSDQTQVVTCAIPNPPEWPPLLQLPALSCNTTASCYFTMLFTANNHSFGQSVSKNMFPSALTMNDYDIMASLAPNVLGSGTKPTDNNFHETAFTPEYPIFNLQTQCPQNNSGFLFPYQIAGTTAQQEIKCARGIYSWRNSSSDINKELYQTYQRGNPKRRINNIVSVFDFLNSNEDGFNVTVRFNATTKGADINHLNAMLRIPRSVNMISNAYLQFLLGPSTKILFEFVKEMPKSETPIRIEIATLLGSLFFTWVVLQLFPVVLTSLVYEKQQKLRIMMKMHGLGDGPYWMITYGYFLALSAIYMLCFVIFGSVLGLKFFTLNDYSIQFVFYFIYINLQISTAFLLSSFFANVRTATVTAYIGVFGTGLLGGFLFQFFVQETSFPRGWIICMELYPGFALYRGLYEFAQFSSSLSNLRTDGMRWKDLSDGVNGMKEVLIIMSAEWIVVLLVAYYIDQVLSTGSGKGPLFFLKGFQIKLLPSLKKPSIQRQGSKVFAQMEKPDVIQEREKVKQLLHEPTINHAIVCDNIKKFYPGRDGNPGKFAVRGLFLAVPRGECFGMLGPNGAGKTSFISMMIGLTKPASGAAYVQGLDIGTHMNGIYTSMGVCPQHDLLWESLTGREHLLFYGRLKNLTGSILTQAVEESLKSLNLYHGGIADKQAGKYSGGMKRRLSVAISLIGDPRIVYLDEPSTGLDPASRKWLWNVIKIAKLDRAIILTTHSMEEADALCDRLGIFVNGSLQCIGNPKELKGRYGGTYLFTMTTSSDHEKDVENIVQRLTPNANKIYHLSGTLKFELPKEDVKIANVFQAVEVAKRNFTVIAWGLSDTTLEDVFIKVAREAQAFDTLQ* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3909 932 SMART AAA_5 640 824 IPR003593 -
Mtr4g3909 932 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 610 847 IPR003439 GO:0005524
Mtr4g3909 932 ProSitePatterns ABC transporters family signature. 749 763 IPR017871 GO:0005524
Mtr4g3909 932 Pfam ABC-2 family transporter protein 264 541 - -
Mtr4g3909 932 Pfam ABC transporter 636 776 IPR003439 GO:0005524
Mtr4g3909 932 Gene3D - 598 873 IPR027417 -
Mtr4g3909 932 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 9 931 IPR026082 GO:0016021|GO:0055085|GO:0140359
Mtr4g3909 932 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 9 931 - -
Mtr4g3909 932 CDD ABC_subfamily_A 614 835 - -
Mtr4g3909 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 610 841 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3909 Mtr-Chr4 52821105 52830376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3909 586 858 Calmodulin-binding Proteins AT2G36910 24.211 3.66e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3909 - - gmx:100792897 1356.27