Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3907 ATGGGTAAATCACCAGGAAAATGGATCAAAACTGTACTGTTTGGGAAGAAGGCATCCAAATCAAATATACCAAGAGGAAGAGAGAAGCTTGTTAATCAAAAGGAAGGAGTTGTTGCTTCCAAGGTTTCGGAAACTGGTTTAGCTTTAGAGCCAACCTCCAACACTATTGCCGTACATGAGGAAGACCTGGAGCTGGAGAATAAAGAAGCAGAAAATGTTTTACCTGGAAACCAAGAAATTGACACAGTGGGACCTGTTGATCAAGATGCACCACTTGATCCAGAGAAAATGAAGCTGGAGGAAGCAGCTACAAAAGCACAGGCTGCTTTCAGGGGTTATCTGGCCCGGAGAGCATTTAGAGCCTTAAAAGGCATAATAAGGTTACAAGCACTTATTCGTGGGCACTTGGTTAGAAGACAAGCTGTTGCTACATTGTGCTGTATGTATGGAATTGTCAAATTACAAGCACTAGTTCGTGGACAAATAATTAGAAAGTCTGATGTTGGATTTGAAATTCATGAGAAGTGCAATCTATTGAAGCTTCAGGATGCCAAACCTGTCAAGCCAATTGCTATATCTGGTAAAATTATGAAGTTGTCAGCAAACACTTTCACCCGTAAGCTTATTGCTTCATCAACTACAATTATGGCCCTGCGTTTGCAATATGTTTGTGGTGATCCAAATTCAGTCCTTAGTTGGTCTGAGCGCTGGTCAGCATGTCGGTTTTGGAAGCCAATTCCCCAACCCAAGAAAATCCGGGATACTAAGTCCCAGAAAAAGCAGGGTAATATTTCAACTGGAGATGCTCAGATGACCAAGTCTAAACGTACCCACAGGAAGCTTCCTACTGCGAATTTTGACGTAGCTCCAGCACAAGCAAACCCTGAAGTTGAAAAACCAAAACGAAACACAAGGAAATTTCCTAGCCAACCCTCAGATCCTTTGCTGGAAAATCCACAGATTGAGCTTGAGAAGGTTAAACGTAACTTGAGAAAGGTTCATAACCCAGTTGTAGAAGCTGCAGTTCTGTCAGAAGTTGAATCTGAGATTCCTAAGCCTCATTTGGAAAAGGAAATAGTTGCCTCAAGTGCTGGTGTTTCACAACAAGGGGTCATTAATTCCAATGAAATGGTAAAAAAGGAAGCAACGTTAACCAGTGAGCCAGAGATGGGAATTACTCCTAGCCCTAGAGATTTAGTTACTAAGGAGGTGTTTGACACTCCTAGCAGTTATCAGGTGAATGTGGAATCAAAGCCTTTGACAGATATTACAAGTAAAGATAAAAACATTTCTGATGATGAAGTTAAAAATGAACCCAAAGATTTAGAAGAGACTGTTTGCAAAGATGAAAATTCTCACTTAACAAATGGAGATTTGAATCACAAGGAAGATCAAACAGGAAGTGAAAACCAGAAACCAACCCGAAAAGCCTCAATTGGAGCTAAGCAGGAACGTGCAGAGAACGGTTTGATTAATAGTCCGACGGTACCAAGTTATATGGCAGCAACTGAATCTGCCAAGGCAAAATTGAGGGCTCAAGGATCCCCAAAAGTCGTACAAGATGGAAGTGAGAAAAACAACAGTGCTCGGCGACAGTCCCTGCCATCTCCAACTAACAGCAAAATCAGTTCGCATTCACCTAGGACACAGAGACCAGTTCATTCAGGTGGTAAAGGGGGCCATAAAAGCGACAAAGCAGCATCTTCTTCTAGAGATGGAAATGGAAAGGTAGTTCAAGCAGAATGGAAGAGGTGA 1755 0.4194 MGKSPGKWIKTVLFGKKASKSNIPRGREKLVNQKEGVVASKVSETGLALEPTSNTIAVHEEDLELENKEAENVLPGNQEIDTVGPVDQDAPLDPEKMKLEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMYGIVKLQALVRGQIIRKSDVGFEIHEKCNLLKLQDAKPVKPIAISGKIMKLSANTFTRKLIASSTTIMALRLQYVCGDPNSVLSWSERWSACRFWKPIPQPKKIRDTKSQKKQGNISTGDAQMTKSKRTHRKLPTANFDVAPAQANPEVEKPKRNTRKFPSQPSDPLLENPQIELEKVKRNLRKVHNPVVEAAVLSEVESEIPKPHLEKEIVASSAGVSQQGVINSNEMVKKEATLTSEPEMGITPSPRDLVTKEVFDTPSSYQVNVESKPLTDITSKDKNISDDEVKNEPKDLEETVCKDENSHLTNGDLNHKEDQTGSENQKPTRKASIGAKQERAENGLINSPTVPSYMAATESAKAKLRAQGSPKVVQDGSEKNNSARRQSLPSPTNSKISSHSPRTQRPVHSGGKGGHKSDKAASSSRDGNGKVVQAEWKR* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3907 584 PANTHER PROTEIN IQ-DOMAIN 31 1 570 - -
Mtr4g3907 584 Pfam Protein of unknown function (DUF4005) 484 563 IPR025064 -
Mtr4g3907 584 Gene3D - 97 146 - -
Mtr4g3907 584 MobiDBLite consensus disorder prediction 251 319 - -
Mtr4g3907 584 MobiDBLite consensus disorder prediction 519 551 - -
Mtr4g3907 584 PANTHER IQ-DOMAIN 5-RELATED 1 570 - -
Mtr4g3907 584 MobiDBLite consensus disorder prediction 372 584 - -
Mtr4g3907 584 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Mtr4g3907 584 Pfam IQ calmodulin-binding motif 101 120 IPR000048 GO:0005515
Mtr4g3907 584 ProSiteProfiles IQ motif profile. 99 127 IPR000048 GO:0005515
Mtr4g3907 584 SMART iq_5 98 120 IPR000048 GO:0005515
Mtr4g3907 584 SMART iq_5 121 142 IPR000048 GO:0005515
Mtr4g3907 584 ProSiteProfiles IQ motif profile. 123 145 IPR000048 GO:0005515
Mtr4g3907 584 MobiDBLite consensus disorder prediction 405 420 - -
Mtr4g3907 584 MobiDBLite consensus disorder prediction 421 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3907 Mtr-Chr4 52809364 52816664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3907 1 584 IQD Protein Family AT1G74690 45.219 7.70e-130 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3907 - - gmx:100794636 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g1571 5 16884218 16890089 Mtr4g3907 4 52809364 52816664 ECH
Mtr4g3907 4 52809364 52816664 Mtr4g3907 4 52809364 52816664 ECH
Mtr5g1571 5 16884218 16890089 Mtr4g3907 4 52809364 52816664 PCT