Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3899 ATGGAGTGCAGTTCTGGGAGATCTGGTGATGGAGATAGTGGACTCAAAGATGATAAGAGAAGTGAGCATAGTACTGGTGATGATCATGAAAGTCATCATCATAAAAAGGAGATTATTGCTGAGGAAGCACCCATTGCTAGTACAGAAAGATCAATTGAGGCTGGTCCAAGCACAATATCCTCGCCCAAAAATGATAAGGTTGATGAACAGCTTGAGACAACAAAAGCTCAAATGGGTGAGGTGAGAGAAGAAAATCAACGGTTAAAGATGTGCTTGAACAAAATAATGACTGAATACCGAGCACTGGAAATGCAATTTAACAATATGGTTAAGCAAGAAACAAAAAAGAACAATGATAATAACCATGAAGAAATGAATGCAGAATCAGATCTTGTTTCTCTCAGTCTTGGAAGAGTTCCTAGTAACAATATTCCAAAAAATGATCAAGAGAAAGTTAACAAAGTGTCTAAACTAGCATTGAATAATGATGAAGAATTCAATAAGGAAGAGTTGTCACTTGGATTGGAATGTAAATTTGAAACATCAAAATCAGGTAGCACAACTGAAGGGTTACCAAATATTCCAAGTCCAGTGAATAGTTCTGAAGTTGTTCCAATAAAGAATGATGAAGTTGTGGAGACTTGGCCACCAAGTAAGACACTCAATAAGACAATGAGAGATGCTGAGGATGAAGTTGCTCAACAAACTCCTGCAAAGAAAGCTAGAGTTTGTGTTAGAGCAAGATGTGACACCCCAACGATGAATGATGGATGCCAATGGAGGAAGTATGGACAAAAAATTGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGCTGCACAGTTGCACCATCATGTCCAGTTAGAAAACAGGTACAAAGATGTGTTGAGGACATGTCTATTCTAATCACAACATACGAAGGGACACACAACCACAGCCTTCCACTTTCAGCAACAGCAATGGCTTCCACAACTTCCGCGGCCGCATCGATGCTATTATCAGGTTCATCAACCTCAAACTCTGGTTCAATGCCATCAGCACAAACCAACAATAATCTTCATGGCCTAAACTTTTATCTACCAGATGGTACAAAATCAAATCAATTATACCTATCCAACCCTGCACTATCATCTCAACATTCACATCCAACTATCACTCTTGACCTCACTTCAAACCCATCAAATTCTTCAACATCATCACCCTTTGTTAGATTCAATTCAAGCTACAACAACAATAACCAACTACCAAGATACCCTTCTTCCACTCTTAGCTTTAGTTCTCCTGAATCAAATCCCATGCATTGGAATAGCTTCCTCAACTATGCTACTACTCAAAATCAACCATATAGTAATAATAGGAACAATAATAACCTAAGCACTTTAAACTTTGGTAGACAAAACACAATGGAAAGTATATACCAAACCTACATGCAAAAAAACAACAATAGTTCAAACATTTCACAACATGTAGGTTTACAAGATAGTACTATATCTGCAGCAACAAAAGCTATCACAGCAGATCCAACTTTTCAATCAGCTTTAGCTGCAGCACTTTCTTCGCTTATCGGAAACACCACCAATCAAGGGAATCAAAATCAAAGTGCAGGAGAAAATTTGAGTCAGAAAATGAAATGGGCTGAGATGTTTCAAGTTTCTTCTACTTCATTGCCTTCATCAAGTTCTAAAGTAAATGGTTGTGCTTCAAGTTTCTTGAACAAAACGGCACCGGTGAACAATACACAGAATGGAAGTTTGATGTTGTTGTCTCCTTCTTTGCCATTTTCTGCAACTAAAAGTGCTTCTACATCTCCTGGTGGTGATAATAGTGACAACACCAATTAA 1842 0.3822 MECSSGRSGDGDSGLKDDKRSEHSTGDDHESHHHKKEIIAEEAPIASTERSIEAGPSTISSPKNDKVDEQLETTKAQMGEVREENQRLKMCLNKIMTEYRALEMQFNNMVKQETKKNNDNNHEEMNAESDLVSLSLGRVPSNNIPKNDQEKVNKVSKLALNNDEEFNKEELSLGLECKFETSKSGSTTEGLPNIPSPVNSSEVVPIKNDEVVETWPPSKTLNKTMRDAEDEVAQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPSCPVRKQVQRCVEDMSILITTYEGTHNHSLPLSATAMASTTSAAASMLLSGSSTSNSGSMPSAQTNNNLHGLNFYLPDGTKSNQLYLSNPALSSQHSHPTITLDLTSNPSNSSTSSPFVRFNSSYNNNNQLPRYPSSTLSFSSPESNPMHWNSFLNYATTQNQPYSNNRNNNNLSTLNFGRQNTMESIYQTYMQKNNNSSNISQHVGLQDSTISAATKAITADPTFQSALAAALSSLIGNTTNQGNQNQSAGENLSQKMKWAEMFQVSSTSLPSSSSKVNGCASSFLNKTAPVNNTQNGSLMLLSPSLPFSATKSASTSPGGDNSDNTN* 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3899 613 Gene3D WRKY domain 238 316 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr4g3899 613 SMART WRKY_cls 254 314 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g3899 613 MobiDBLite consensus disorder prediction 1 68 - -
Mtr4g3899 613 Pfam WRKY DNA -binding domain 255 312 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g3899 613 Coils Coil 64 84 - -
Mtr4g3899 613 SUPERFAMILY WRKY DNA-binding domain 247 315 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mtr4g3899 613 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 29 608 IPR044810 GO:0003700
Mtr4g3899 613 MobiDBLite consensus disorder prediction 11 43 - -
Mtr4g3899 613 ProSiteProfiles WRKY domain profile. 249 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mtr4g3899 613 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 29 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3899 Mtr-Chr4 52738531 52742852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3899 78 528 WRKY Transcription Factor Family AT5G15130 42.443 4.67e-86 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mtr4g3899 WRKY 1.7e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3899 - - pvu:PHAVU_003G192000g 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g0145 7 2443977 2448048 Mtr4g3899 4 52738531 52742852 ECH
Mtr4g3899 4 52738531 52742852 Mtr4g3899 4 52738531 52742852 ECH