Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3896 ATGGCGGTTGTACTTGCAAAAACTCTAACGCTCAAACGAGCCTTGGAAGCATTTGGACACCAGGCTGTTGAGGGATTTTTGGCGTGTCTTGTACTCAGAGAAACCTTCAATCCACATTGTGCTGCACCAGACATTGATCCAGTGATCAGGATGACAGAACCTGCATCTATCGAGGAGGAAAATTCGTCGCCGCCTCTTCCTGAAATAACACTTGGAATTGACATTGGCAGATCACCATGCTGTGTTTCTGTGTGGAATGGTTCCAGAGTGGAGATTTGGAAAGAAAGTATAAATGAGATGATTAAGAGATATTTCGAAACTTTCGATCATGTCTTTACTGATGGAGCTAGTAGTAGTAACGTCTCACTCTCCCAAGCGCATGAGGATGCAGTTTCCAACCTGAAAGACTTGATTAGCGCACTTTTCAACGAAAGTGCCAATTTCCCATTTCTGATGCACACTTTGGACATTAAGATTCGTCCTTTTGTAGCTGCATTTGTGAACAAAGTGTGCAAATCAACCACTGCAGTAGAACTCCTTGGAAACTTTCTGGTGAATTTAAAAGAAATGGCTGAAACTGAACTGAAACAACCTATAAGAAATGTAGTGTTTATTATTCCAGTTTCGTTCAGTCGATTGCAGCAAACCCGGATACGTATCGCTTGTGAGATGGCCGGTCTAAAAGTTATTAGACTGATGCCTGAACCAACAGCAGTGGCTTTGCTTTATGCACATCAACAACTGCATGCTTCTGCTTCTTCTCACGAGGATATGGACAATGAAAGCAAGAAAATTGCTCTGATTTTCAATATGGACGCGGGTTATTGTGATGTTGCTATTATTGCAACAGAAAAAGGAAAACGCCAAATAAAAGCGTTGGCAGGAAGTGCTATTGGTGGAGAAGATTTGCTTGGAAATATGATGTGTCATCTCTTTCCCGATTACGAAAATATATTCAAGAGAAATGTTCACAGGGACACAGAAATTACAAGGATGGCTTCTCTTCGAAGTATAGTCCACAACGCGATTACTAAGCTTTCGTCCGAGGCAAGTGTTAAGGTTTATTTAACGTCACTCAATCGTAGGGATGTAACACGGGAGGAGTTTGAGGAAGTAAACAAAGAGGTGTTTGAAAATTGTGAAAAGCTAATCATCCAATGCATACAAGATGCAAAGATAGAAGTTGAGAATATAAACGATGTGATAATTGTAGGTGGATGTTGTAATATACCAAGGGTAGAGAGTCTTGTTACTAAAATATGCAAAGGAAAGAAACCTTATAAGTTAGGTGTGAACCCTTTGGATGATGTACTTCGTGGTGCAACAGTGGCAGGAGCTGTTAATGACCCCTCTGGTGACTTGGACTTGCTTACTTCTCAAGTCACACTTCTTGCCATCGGAATTCGAGCTGATGGAAACAAATTTGTACCAATTATTCCAAGGAACACACCAGTGCCAACCATGAATTCGGATATACTTTTGACAACTATTCATGATAATCAAACTGCGGCATTGATCGTTGTTTACGAAGGTGAGGGACAGAAGGTTGAAGAAAACCAACTTTTAGGATATTTCAAACTAACTGAAATACCTAAAGCACCAAAAGGTTTTCCTAAAATCATTGTTTCCATGGACATAGACGATAAGAGCGCGTTGAGAGTTACTGCTTTTCTTGAGATGCCTCCTATTTCAGTAGAGGTGCGAAATTATGATGCTGGAAGGATTGGTTATTGTGATGAGTCACTAATTAGAAAACATGGTGATAGAATGGATTTGGTTACTCTGGATTTGGAAGAATAA 1800 0.4033 MAVVLAKTLTLKRALEAFGHQAVEGFLACLVLRETFNPHCAAPDIDPVIRMTEPASIEEENSSPPLPEITLGIDIGRSPCCVSVWNGSRVEIWKESINEMIKRYFETFDHVFTDGASSSNVSLSQAHEDAVSNLKDLISALFNESANFPFLMHTLDIKIRPFVAAFVNKVCKSTTAVELLGNFLVNLKEMAETELKQPIRNVVFIIPVSFSRLQQTRIRIACEMAGLKVIRLMPEPTAVALLYAHQQLHASASSHEDMDNESKKIALIFNMDAGYCDVAIIATEKGKRQIKALAGSAIGGEDLLGNMMCHLFPDYENIFKRNVHRDTEITRMASLRSIVHNAITKLSSEASVKVYLTSLNRRDVTREEFEEVNKEVFENCEKLIIQCIQDAKIEVENINDVIIVGGCCNIPRVESLVTKICKGKKPYKLGVNPLDDVLRGATVAGAVNDPSGDLDLLTSQVTLLAIGIRADGNKFVPIIPRNTPVPTMNSDILLTTIHDNQTAALIVVYEGEGQKVEENQLLGYFKLTEIPKAPKGFPKIIVSMDIDDKSALRVTAFLEMPPISVEVRNYDAGRIGYCDESLIRKHGDRMDLVTLDLEE* 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3896 599 Gene3D - 259 427 - -
Mtr4g3896 599 Pfam Hsp70 protein 71 558 IPR013126 GO:0005524|GO:0140662
Mtr4g3896 599 PRINTS 70kDa heat shock protein signature 69 82 - -
Mtr4g3896 599 PRINTS 70kDa heat shock protein signature 274 284 - -
Mtr4g3896 599 PRINTS 70kDa heat shock protein signature 398 414 - -
Mtr4g3896 599 PRINTS 70kDa heat shock protein signature 431 451 - -
Mtr4g3896 599 PRINTS 70kDa heat shock protein signature 455 474 - -
Mtr4g3896 599 PRINTS 70kDa heat shock protein signature 537 553 - -
Mtr4g3896 599 PANTHER HEAT SHOCK 70 KDA PROTEIN 8 57 595 - -
Mtr4g3896 599 CDD HSP70_NBD 71 446 - -
Mtr4g3896 599 PANTHER HEAT SHOCK PROTEIN 70KDA 57 595 IPR013126 GO:0005524|GO:0140662
Mtr4g3896 599 Gene3D - 71 445 - -
Mtr4g3896 599 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 458 561 IPR029047 -
Mtr4g3896 599 Gene3D - 132 182 - -
Mtr4g3896 599 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 450 569 IPR029047 -
Mtr4g3896 599 SUPERFAMILY Actin-like ATPase domain 69 245 IPR043129 -
Mtr4g3896 599 SUPERFAMILY Actin-like ATPase domain 264 447 IPR043129 -
Mtr4g3896 599 Gene3D Actin; Chain A, domain 4 300 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3896 Mtr-Chr4 52715281 52718476 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3896 71 556 Calmodulin-binding Proteins AT3G12580 32.271 2.55e-69 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3896 K09489 - gmx:100809773 520.776