Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3894 ATGGAAGTCAACAAGCGTAGATTGCTCTTTGGTTGTGTATTTTTTCTTGCTATAGTCCCAATCTTCGAGGCTAACATAGTTCATTTCGACCAATACTGGCAGAACCGATCTGATGATGCCAAAAAGGCTGCACAGCAAGCTTATAAGCCAAACCCTCAGGAAATAACTTCTAATTTGAATATGCATGTCCACAAGGCTCTTAGTGGTTCCAATAGTACGAGGAGGGAATTAGCCAAATACAAAGGTCCATGCTCAGCCACAAATCCCATCGATAGTTGCTGGAGATGTGATCCAAATTGGGAAAAGAATCGCAAGAAGCTAGCAGATTGTGTTCTTGGTTTTGGTCACGGCACAACAGGAGGCAAAGCTGGCAAAATATATGTTGTCACTGATTCATCTGACAATGATCTTGTCACACCAAAACCAGGGACATTGCGATTTGCAGCCATTCAAAAAGAGCCATTATGGATCATTTTTAAACATAATATGAATATCAAACTAAAGGCGGAGCTTTTACTGACCAGTGACAAGACCATAGATGCACGTGGTGCAAACGTTCATATTAGTGAGGGTGCTCAGATAACGTTGCAATACGTGAAAAACATAATCATCCATGGGTTACATATCCATGATACTAAAAAAACCAGCGGTGGCCAAATCAGAGACTCGATGGATCACTATGGATCCCGTAGTGCGAGTGATGGTGATGCAATTTCAATGTTTGGAGCTAGTCATGTTTGGATAGATCATATTTCAATGTGGAATTGTGCTGATGGATTGGTTGATGCCGTAGCGGGATCAACGGCTATTACCATTTCCAACTGCCATATGACGCGTCATAATGATGTTATGTTATTTGGAGCAAATGATGGGTTCTCAGGAGATCAAATCTCGCAAATAACTGTGGCTTTTAACCATTTTGGGAAAGGATTGATACAGAGGATGCCAAGGTGTAGATGGGGATTCTTTCATATTGTTAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGCACACATCCCACCATACTCAGCCAGGGTAACCGGTTTATTGCTCCTCCTAACCCAAATGCAAAAGAGGTGACAAAGAGGGATTATGCACCTGAAAGTGTATGGAAGGCATGGAGTTGGAGATCAGAGAATGACTTGATGATGAATGGAGCCTTCTTTAAACAGTCTGGAACTAAGGCTGCAAATTTTCCCAAGTCAGACATCAAGGCAAAGCCAGGGAGTTTTGCAGCAGCGCTTACTCGTTTTTCGGGTTGTCTAAAATGTGAAGTAGGCAAGCCATGTTAA 1305 0.4215 MEVNKRRLLFGCVFFLAIVPIFEANIVHFDQYWQNRSDDAKKAAQQAYKPNPQEITSNLNMHVHKALSGSNSTRRELAKYKGPCSATNPIDSCWRCDPNWEKNRKKLADCVLGFGHGTTGGKAGKIYVVTDSSDNDLVTPKPGTLRFAAIQKEPLWIIFKHNMNIKLKAELLLTSDKTIDARGANVHISEGAQITLQYVKNIIIHGLHIHDTKKTSGGQIRDSMDHYGSRSASDGDAISMFGASHVWIDHISMWNCADGLVDAVAGSTAITISNCHMTRHNDVMLFGANDGFSGDQISQITVAFNHFGKGLIQRMPRCRWGFFHIVNNDYTHWLMYAIGGSTHPTILSQGNRFIAPPNPNAKEVTKRDYAPESVWKAWSWRSENDLMMNGAFFKQSGTKAANFPKSDIKAKPGSFAAALTRFSGCLKCEVGKPC* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3894 434 SMART amb_all 162 359 IPR002022 -
Mtr4g3894 434 Gene3D - 87 427 IPR012334 -
Mtr4g3894 434 PANTHER PECTATE LYASE 7 434 - -
Mtr4g3894 434 Pfam Pectate lyase 171 353 IPR002022 -
Mtr4g3894 434 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Mtr4g3894 434 SUPERFAMILY Pectin lyase-like 88 417 IPR011050 -
Mtr4g3894 434 PANTHER PECTATE LYASE 18-RELATED 7 434 IPR045032 GO:0030570
Mtr4g3894 434 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Mtr4g3894 434 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Mtr4g3894 434 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Mtr4g3894 434 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Mtr4g3894 434 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Mtr4g3894 434 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Mtr4g3894 434 PRINTS Pollen allergen Amb family signature 378 402 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3894 Mtr-Chr4 52696723 52698281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3894 1 434 Polysaccharide Lyase AT3G01270 53.684 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3894 K01728 - gmx:100801864 672.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g0126 7 2276301 2278222 Mtr4g3894 4 52696723 52698281 ECH
Mtr6g0264 6 3153005 3154908 Mtr4g3894 4 52696723 52698281 ECH
Mtr5g1563 5 16826320 16828456 Mtr4g3894 4 52696723 52698281 ECH
Mtr4g3894 4 52696723 52698281 Mtr4g3894 4 52696723 52698281 ECH