Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3882 ATGGCGGGTGGGAGAGTTTTTTCAAATGGTCCTGCAAATATTTCAAATATAAATATGAATATTTTGCTTCAGAATCAACAACAAACTCCTCGTGGAAACTCTTCTCAACAACCTCTTGATTCTCTTTTCCTTTCTTCTTCTGCTTCTTTCTTTGGTTCAAGATCTATGGTGAGTTTTGAAGATGTTCAAGGAAGGAAAAGGCGCAACAGGTCTTTCTTTGGAGGATTTGATCTTGACGAAAACGGAGAGGATGAGATGGATGAGTACTTTCATCAATCCGAGAAGAAACGGCGTCTCTCAGTGGATCAAGTTCAGTTTCTTGAGAAAAGCTTTGAGGAGGACAACAAACTTGAACCAGAGAGGAAAACCAAGCTAGCTAAAGACCTTGGTTTGCAGCCACGGCAAGTTGCTATTTGGTTTCAAAACCGTCGTGCAAGGTGGAAGACTAAACAGCTTGAGAAGGATTATGATTCTCTTAATGATGGTTATGAGTCTCTTAAGACAGAGTATGACAACCTTCTCAAAGAGAAAGATAGGTTACAATCACAGGTGGCAAGCCTAACTGAAAAGGTACTTGAAAGAGAGAAACAAGAGGGAAAATTCAAACAAGGTGAAAGTGAAACAAAGGAATTCTTGAAGGAACCAACAATTAATAAGCCTTTGGTTGATTCAGTTTCTGAGGGTGAAGGATCCAAATTGTCAATTGTTGAGGCTTCTAATAATAATAATAATAATAACAAACTTGAAGATATTAGTTCAGCAAGGAGTGACATATTGGATTGTGAAAGTCCACGCTACACTGATGGAGTGTTAGAGACATGTGATTCTTCCTATGTATTTGAACCTGAATATCAATCGGACCTATCACAAGATGAAGAAGATCACAATTTATTGCCTCCTTACATCTTTACAAAACTTGAAGATGTGAATTACTCCGACCCGCCACATAATTCAACAAGTTATGGATTTCAAGAGGAAGATCATCATCAAGCTCTTTGGCCTTGGTCTTATTAG 1014 0.3836 MAGGRVFSNGPANISNINMNILLQNQQQTPRGNSSQQPLDSLFLSSSASFFGSRSMVSFEDVQGRKRRNRSFFGGFDLDENGEDEMDEYFHQSEKKRRLSVDQVQFLEKSFEEDNKLEPERKTKLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDSLNDGYESLKTEYDNLLKEKDRLQSQVASLTEKVLEREKQEGKFKQGESETKEFLKEPTINKPLVDSVSEGEGSKLSIVEASNNNNNNNKLEDISSARSDILDCESPRYTDGVLETCDSSYVFEPEYQSDLSQDEEDHNLLPPYIFTKLEDVNYSDPPHNSTSYGFQEEDHHQALWPWSY* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3882 337 ProSiteProfiles 'Homeobox' domain profile. 90 150 IPR001356 GO:0003677
Mtr4g3882 337 Gene3D - 145 194 - -
Mtr4g3882 337 Gene3D - 98 144 - -
Mtr4g3882 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 334 IPR045224 GO:0003700
Mtr4g3882 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 25 334 - -
Mtr4g3882 337 CDD homeodomain 95 151 IPR001356 GO:0003677
Mtr4g3882 337 PRINTS Lambda-repressor HTH signature 121 130 IPR000047 GO:0003677
Mtr4g3882 337 PRINTS Lambda-repressor HTH signature 130 146 IPR000047 GO:0003677
Mtr4g3882 337 Coils Coil 149 197 - -
Mtr4g3882 337 SUPERFAMILY Homeodomain-like 94 162 IPR009057 -
Mtr4g3882 337 MobiDBLite consensus disorder prediction 196 215 - -
Mtr4g3882 337 SMART HOX_1 93 154 IPR001356 GO:0003677
Mtr4g3882 337 Pfam Homeodomain 95 148 IPR001356 GO:0003677
Mtr4g3882 337 Pfam Homeobox associated leucine zipper 150 191 IPR003106 GO:0006355|GO:0043565
Mtr4g3882 337 ProSitePatterns 'Homeobox' domain signature. 125 148 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3882 Mtr-Chr4 52580493 52583042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3882 52 278 Homeobox Transcription Factor Family AT3G01470 43.913 9.95e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr4g3882 Homeodomain 6.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3882 - - mtr:MTR_4g107650 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3882 4 52580493 52583042 Mtr4g3882 4 52580493 52583042 ECH