Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3873 ATGGGACACAAAAAGCGAAACTCTGTTCCTCCTCGTTCCAAACTATCTCCGGCGGCTTCTCCGGTGAATCAATCTCCCATCGGCGGAGCCGCCACCGCCACCACCACCAACGGCTCTACTTCACCCGATGCCGATAATTCAATCATTCTATTCGATCCTAACCCTAACAAGATCGAATTTGCCAATAACGGTTCTCCTCAATCCGAGGCTTCTCATTTCTCTGCAATTAAGGTAGAATGCGAGCGTGCCTTAACCACGTTTCGTCGTGGGAATCATAATCGAGCAATGAAGCTCATGAAGGAGTTGTGTTTGAAAGAAGAAGGTTCGTTTTATTCGCCTTTTGTTCATCGAATTTACGGTTTTATTTGTTTTAAAGTGGCTTCTGTTATCACTGATTGTAACGCGAAGCAACGGCATTTGAAGCATGCTGTTGATTTGGCTAGAAGAGCTGTTGAGCTTTCGCCGAATTCGGTTGAGTATGCACATTTTCATGCTAGTGTGATGTTGGAAGCTGCTACCGAGGCGAAGGATTATGAGGATGTGGTTCATGAGTGTGAGAGAGGGCTTGCGATTGAATATCCTACTGATCCGGCTAAGGAGACGTTGCAGGATGAGAGTGAGCAGAAAGTGTCTACTATGGAGGATAGGATATTACATGTGCAGGGTGAGTTGAGGCAGTTGATTCAGAAGTCGAATATAGCTTCGTTGTCGTCTTGGATGAAGAATTTGAGTAATGGGGAGGAGAGGTTTCGGTTGATTCCGATAAGGAGGGCTACAGAGGATCCTATGGAGGTTAGGTTGGTTCAGACTAGAAGGCCGAATGAGATTAAGAAGGTGACTAAGACGCCCGAGGAAAGAAGAAAAGAGATTGAGGTAAGGGTAGCTGCTGCGAGGCTTTTGCAGCAGAAGTCGGAGTCTCCTCAGTCTCCGAACGAAGGAGATAGGGAAGACAGAGCATTGGATTTGAATTCAGGGTCTAGTCAGAGGACAGGCGAGAGGCGAAGACATTTGAGAAAGAATGGCTCTACAGCTGAAAGGAGAAAGTGGGTGTTAAGTTATTGGGATTCGGTGGGTATGGATGTGAAAAAGGACTTGCTTAAGATTAAAATAAGTGATATTGTGTCCCACTTCAACTCTACAAAGGATACTTTGCTAAAAGATGTTTTATCAGAAGCTTTGTCTTATGCTGAAGCCAATAAAACATGGAGATTTTGGAGTTGCTGCATTTGTTCTGAGAGATTTTCCAATCAGGAATTTCATAGGCAGCATGTTATGCAGGTTCACCTTCAGACTCTCCCGCCAAAAATGCAGAGAATTTTGCCTCAACATGTTGACAATGAATGGATTGAGATGATTCTTAATTGTTCCTGGAAGCCTTTGGATGTCTCAGCTGCAGTTAAAATGCTTGATTATAAAGCAAAATTCAGAGGTTCATCACGTCCGGAGGATTATCTTACTCAGGACTACGATGATTGTTTTAAAGATTCAAACAGTTCTTACCATGAACAGGAAAGTTTAGGGTACAGTGCTGTTAATTGTACGTCCGAAAGCAGTAAGTATTATAAAATTGATGAAAGTGATGTCAGAGAAGGCATTGAAGACCAACAATTTATGGCAAATCCTGTTTCTGATTGTTGGCCTGTATCTGATGACGAGGAGCGTGCACAACTTCTGGAGAAAATCCATGGGGCATTTGAGATACTTATTAGATACAAATGTCTTGCTGCTGGTCATCTTCACAAGGTCATACAATTTAGTATAAGTGAGATCCAGGGTCTTGCTGCTGGTTCTGAACTTCTAAAACATGATATAGACCAAACGCCAATGTGTATATGCTTTCTGGGAGCTTCACAGCTCAAGAAAATTCTTCAATTTCTGCAGGAATTGTCTCATGCTTGTGGGTTGGGTAGATATGCTGATAAAAGTAGTAGTCCCAAGAATGATTTGCATGATATCAGTCAAGGTGCTGAAGCCAAAGAAAAAATTGTTCTCAGTGGAGATGCATCATGCCTCCTCCTGGATGAGTGTCTACTGCGAACACAAGTCACTCCTGGTATAACGCAGGAGGCTGTCTTCGAGGACCTGGTCACTCCAAGTTCTCCTGATGGAATTTCAGACAGTAGTGGTGCTTTGCTGTCCTGGCTATATGCAAGTCGACCTATTGGGGATCATTTTGCGTCATGGAGTCGGACCAAAGAAGATAAAATGTGTCAAGGACAAGAAATGGTCCGGGCACTTGACAAGGAGTTTTACCAATTACATAGCCTGTGTCAGAAAAAGTGTGAACGTTTGAGTATTGAGGAAGCACTACAGACAATAGAGGATCTTTGTCTTGAAGAAGGTAAGAAGAGGGAAAACGTGAGTGAATTTGTGCAGCGAAGCTATGAGTCAGTCTTAAAAAGGCGGAGAGATGAGCTTGCAGAGAGGGAGAATGAAATGATGTATCCCGGCAATAGGGTTGAGTTTGATTGTATAACAAATGTTTTGCAAGAAGCAGAAACAACGAGTCTTAATAATCAATATTGCTACGATGAAGCTTATACTGGCGTGGCTTCTCAGTTATGTGACTTGGAATCCGGTGAAGATGATGAATGGAGAATGAAGGACTGCTTGCATCAGATGGATGGCTGTATAGAAATTGCTATTCAGAAACTGAAAGAGCACTCATCTATAGAGATTAGCAAAGTTGACGCTGAAATAATTAAATGTGTTTCAGAGGTGCAGCTATTGGAACTCAAGCTTGGGCATGTTTCTACCTATGATTATCGAGCAATACTAGTGCCTCTGGTGAAGCTGTACCTAAAGACACTTTTGGAAGATTTGGCTGAGAAAGATGCAAGGGAGAAATCTGATGCTGCAGGTGAAGCATTTTTGGCTGAACTTGCTCTTGATTCCAAGAAGATTGGCAAAGGGGGAAATGAGAACACGAGACATGTGGAGAAGACAAAGGATAAGAAGAAGAATAAAGATCACAGAAAAACAAGAGATTTGAAGGCCACAAGTGGTTCTATGCACCCCTTGTTTCAGTCTACAAATCTTGATTCCGATCTAGTATCACCTGACAGTGAATTTCAAGATCATGAAGTCGTTTCTATGAATGATGATGATTTGGAACACCATGAAGAGGAATTTAGACGTAAAATTGAGCTTGAAGAGGAGGAAAAAAAGCTTGAAGAAACCTTGGAACTTCAACGAAGGATTGAAAATGAGGCCAAACAGAAGCACCTCGCTGAACAACAGAAGAAATTATCTGGTACATGTTTAGAGGAAATGACTGACAAACTTCAAGATTGTCAATTGAAGACTGTTCCTGATGGCTTGGACGTGCAAGAACATATAAGACTACCTATGCAGGAACAGTTGGCAAAGGAGAATGGGTGCCCAAGCAATCTGGAGGTTGTGCTTAGTACCACAGTGAATGGTTCCATGATGCCGACTAAATCTTCAGCCGATTCCGCTTCCCAAAAAATTAATAATTTGCACCAGTCAAAAATTAAACAAGACATGCCCAATGGAATCGTTCCAGAGAATGGTCTGCCTTTGCCTGATCGGCGTGCAGGAAAAAAACATAAACGGAATAGGAATTTGTCTAAAATGGTTGATGGAAAGTTGGAACACAATGAGAATATTGAGGACTCAAATACTGTCAATCAAGATGCCAAACATTTGTTGGAAAACAATGGAACAAAGGTGATGAAAGAATTGCAAGTGGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTACGTCAAAGCCTAGACACATATCAAGCACGTGGAAGTTTGCCTTTGGTTTCGAGTTTGAGAATGCCTCAAAGACCTTCCTCACAAGTAGACTGTTCAGGTCTTGCACCTGTGGAAGACTCAGCGCAGGATGTGAATGGAGCTAATTTGCTTGGTACGGGACTGAGGAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATTCAGTCATTGTGGCATTTAAGACGCTTTCGGGTGGAATTTCTTGGCAGATCAAGATCAGAGCATGATCATGTGGGTAATCCCTGTGTTGTCTGTGCGTTGTATGACATATTTACTGCTCTAGACCTTGCTTCAAAGGATTCAAGGAGAGAAGCAGTTGCACCTACTTCCCTGCGGATAGCTCTAAGCAATCTATATCCACATAGTAACTTCTTCCAAGAGGCTCAGATGAATGATGCTTCGGAGGTACTGGCTGTGATATTTGATTGCCTTCATAGATCATTTACTCGTGGTTCAAGTGTTTCTGATTCAGAATCAGTGGAAAGCAAATGCATGGGGTCTTGGGATTGTGCAGCTAGTAGTTGTATAGCACATTCACTTTTTGGAATGAACATTTTTGAACAAATGAACTGCTACCATTGTAATCTTGAGTCCAGACATTTGAAGTATACTTCCTTCTTCCAAAATATAAATGCCAATGCCCTCAGGACAATGAAGGCTATGTTTCCCGAAAGCTCCCTTGACAAGCTTTTGAATCTTGTGGAGAGGAACCATCGGTTGACTTGTGATCAAGAAGTTGGCGGCTGTGGCAAGCTCAACCACATCCATCACTTCCTTTCAACTCCACCCCATGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGCGAGAGTGCTAATGACATAGCTGCAACTCTGGCAGCCCTGAGCACCAAGATAGATATCAGTGTCCTTTATCGTGGTTTAAATCCTAAAAGCACCCATAACTTGGTTTCAGTGGTATGCTACTATGGCCAGCATTATCATTGCTTTGCTTATAGCCATGACCACGGCCAATGGATTATGTATGATGACAAGACTGTAAAGATAATTGGTGGATGGGGCGATGTTCTTACTGTCTGCGAGAGAGGGCATCTACAACCTCAGGTGCTCTTCTTTGAAGCTGTAAACTAG 4917 0.424 MGHKKRNSVPPRSKLSPAASPVNQSPIGGAATATTTNGSTSPDADNSIILFDPNPNKIEFANNGSPQSEASHFSAIKVECERALTTFRRGNHNRAMKLMKELCLKEEGSFYSPFVHRIYGFICFKVASVITDCNAKQRHLKHAVDLARRAVELSPNSVEYAHFHASVMLEAATEAKDYEDVVHECERGLAIEYPTDPAKETLQDESEQKVSTMEDRILHVQGELRQLIQKSNIASLSSWMKNLSNGEERFRLIPIRRATEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPQSPNEGDREDRALDLNSGSSQRTGERRRHLRKNGSTAERRKWVLSYWDSVGMDVKKDLLKIKISDIVSHFNSTKDTLLKDVLSEALSYAEANKTWRFWSCCICSERFSNQEFHRQHVMQVHLQTLPPKMQRILPQHVDNEWIEMILNCSWKPLDVSAAVKMLDYKAKFRGSSRPEDYLTQDYDDCFKDSNSSYHEQESLGYSAVNCTSESSKYYKIDESDVREGIEDQQFMANPVSDCWPVSDDEERAQLLEKIHGAFEILIRYKCLAAGHLHKVIQFSISEIQGLAAGSELLKHDIDQTPMCICFLGASQLKKILQFLQELSHACGLGRYADKSSSPKNDLHDISQGAEAKEKIVLSGDASCLLLDECLLRTQVTPGITQEAVFEDLVTPSSPDGISDSSGALLSWLYASRPIGDHFASWSRTKEDKMCQGQEMVRALDKEFYQLHSLCQKKCERLSIEEALQTIEDLCLEEGKKRENVSEFVQRSYESVLKRRRDELAERENEMMYPGNRVEFDCITNVLQEAETTSLNNQYCYDEAYTGVASQLCDLESGEDDEWRMKDCLHQMDGCIEIAIQKLKEHSSIEISKVDAEIIKCVSEVQLLELKLGHVSTYDYRAILVPLVKLYLKTLLEDLAEKDAREKSDAAGEAFLAELALDSKKIGKGGNENTRHVEKTKDKKKNKDHRKTRDLKATSGSMHPLFQSTNLDSDLVSPDSEFQDHEVVSMNDDDLEHHEEEFRRKIELEEEEKKLEETLELQRRIENEAKQKHLAEQQKKLSGTCLEEMTDKLQDCQLKTVPDGLDVQEHIRLPMQEQLAKENGCPSNLEVVLSTTVNGSMMPTKSSADSASQKINNLHQSKIKQDMPNGIVPENGLPLPDRRAGKKHKRNRNLSKMVDGKLEHNENIEDSNTVNQDAKHLLENNGTKVMKELQVEDEEEERFQADLKMAVRQSLDTYQARGSLPLVSSLRMPQRPSSQVDCSGLAPVEDSAQDVNGANLLGTGLRNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRSEHDHVGNPCVVCALYDIFTALDLASKDSRREAVAPTSLRIALSNLYPHSNFFQEAQMNDASEVLAVIFDCLHRSFTRGSSVSDSESVESKCMGSWDCAASSCIAHSLFGMNIFEQMNCYHCNLESRHLKYTSFFQNINANALRTMKAMFPESSLDKLLNLVERNHRLTCDQEVGGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESANDIAATLAALSTKIDISVLYRGLNPKSTHNLVSVVCYYGQHYHCFAYSHDHGQWIMYDDKTVKIIGGWGDVLTVCERGHLQPQVLFFEAVN* 1639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3873 1638 Pfam Protein of unknown function (DUF627) 82 192 IPR006866 -
Mtr4g3873 1638 MobiDBLite consensus disorder prediction 299 341 - -
Mtr4g3873 1638 Pfam Protein of unknown function (DUF629) 351 879 IPR006865 -
Mtr4g3873 1638 CDD Peptidase_C19 1396 1635 - -
Mtr4g3873 1638 ProSitePatterns Zinc finger C2H2 type domain signature. 407 428 IPR013087 -
Mtr4g3873 1638 MobiDBLite consensus disorder prediction 969 1019 - -
Mtr4g3873 1638 Gene3D Cysteine proteinases 1291 1636 - -
Mtr4g3873 1638 MobiDBLite consensus disorder prediction 1168 1193 - -
Mtr4g3873 1638 MobiDBLite consensus disorder prediction 1003 1019 - -
Mtr4g3873 1638 MobiDBLite consensus disorder prediction 1 46 - -
Mtr4g3873 1638 Pfam Ubiquitin carboxyl-terminal hydrolase 1306 1613 IPR001394 GO:0004843|GO:0016579
Mtr4g3873 1638 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1638 - -
Mtr4g3873 1638 Coils Coil 1040 1080 - -
Mtr4g3873 1638 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1305 1637 IPR028889 -
Mtr4g3873 1638 MobiDBLite consensus disorder prediction 13 46 - -
Mtr4g3873 1638 SUPERFAMILY Cysteine proteinases 1305 1635 IPR038765 -
Mtr4g3873 1638 PANTHER INACTIVE UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 53-LIKE 1 1638 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3873 76 1635 C2H2 Transcription Factor Family AT3G47890 54.248 0.0 1603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3873 - - gmx:100799759 2272.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3873 4 52467346 52477307 Mtr4g3873 4 52467346 52477307 ECH