Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3871 ATGACCCTTAAGGGTGGCACAACACAAGCCTGTGCAGCATGCAAATTCCAAAGAAGAAAGTGCACACCTGAGTGCCTTTTAGCTCCTTATTTCCCTGCAGATCAACCCAAAATTTTCCAAAATGTTCACAAATTATTTGGAGTTAGCAACATTGTCAAAATACTAAAGTACCTGGAACCTAGTCAGAAGAAAACAGCCATGGATTCTATTATCATTCAAGCTAATTATAGGGATAAGTATCCTGTGCATGGATGTTGCGAGGAAATTTGCAAGCTACAATATCAAATATGGATGATGGAAGAAGAACTTCATGCTGTTTATCAACAACTTGAAATTTGCAGGCAACAACAAAACCAACAACAGTTACCTCATGATGATGTGACTTCACAGTTAGAATTAGGAATGGCGACACGTTCCTTCAATGCGCTCGCACTCTTTAATCACTCTCCACAACCACAGACTTATAACAACAATAACACAGTTGCTGCATCTTTGTCTGTATCTCAGCAACATTCCTACTCCAACAGCAATAGTGTGGATTATAATAACTCCTCCCTCTACATGGATTCAAAAGATGATGCTACAAATCCTAATTTGTGGCTTCAGTGCCCTTACACAAATAATAATAGCAGTTCAATAGCAATGCAACCTCATAAATTGGTTACCTCAGAGTCGCAGCCACTATCATCTGTCCAACAAGGAGTTGTTGAAGATAATTATGATGAGATGCATTCATTTTTCGATACAGTTGATGATAGGCAATCATACATTTATTCTAAGGAGGCTTATGAATCAAGTTCGGAAGAATCACTGAAAGATACAAGAAAATGCACAGAGCATGTTTCTGAGAATGAACTGAAGAGTGCTGCTGCTTGTTTCAGCCTTACTAGTGTCAACTGA 900 0.3867 MTLKGGTTQACAACKFQRRKCTPECLLAPYFPADQPKIFQNVHKLFGVSNIVKILKYLEPSQKKTAMDSIIIQANYRDKYPVHGCCEEICKLQYQIWMMEEELHAVYQQLEICRQQQNQQQLPHDDVTSQLELGMATRSFNALALFNHSPQPQTYNNNNTVAASLSVSQQHSYSNSNSVDYNNSSLYMDSKDDATNPNLWLQCPYTNNNSSSIAMQPHKLVTSESQPLSSVQQGVVEDNYDEMHSFFDTVDDRQSYIYSKEAYESSSEESLKDTRKCTEHVSENELKSAAACFSLTSVN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3871 299 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Mtr4g3871 299 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Mtr4g3871 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 275 - -
Mtr4g3871 299 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 4 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3871 Mtr-Chr4 52454353 52455544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3871 1 262 AS2 family AT3G47870 38.562 8.81e-56 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr4g3871 LOB 2.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3871 - - lang:109357116 374.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3871 4 52454353 52455544 Mtr4g3871 4 52454353 52455544 ECH