Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3870 ATGGGAGGAGGCGATCCTTCTTTATCGGATATGGAGGAAGAGGAGGAGGAAAACGATGTCATGGTGAACGATTCAGTTGACATTCTTTCACGTTTTCCAATCTTCGATGCTCCTATACTCCTCTTCGTTTGTTTCCACCAAGCTCTGCGTTCTGAACTTGATCAGCTTCGTCCGTTTGCTGAAACTGCGTCGTCCTTGGAACATGATCCAAACCGTTGCCGTGAAATAGTTTTTAAGCTTCAACACAGATTTCAGTTTTTGAAATTAGCTTTTAAGTATCATTGCGCTGCTGAAGATGAGATTATCTTCCATGCACTGGATATTCATGTAAAAAATGTTGTATGTACATATTCTCTTGAACATAACAGCACTAATGGGCTGTTTGATTCTATTTTACACTTCTTGGATGAGCTGATGGGCTCTAGTGAGAATATTTCCAAGCTGTTCCGAGAACTTGTGTACTGCATTGATATCTTGCAAACCTCAGTCTACCAACATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTCTTCTGATCCAAAAATTGTCTACTAAAGAACAAGCCTCACTTGTGTGGCAATTCATATGTAGTGTTCCTATAATGTTGCTGGAGGAAGTTTTGCCATGGATGGTGTCCTTCCTTTCAGCAGATAAACAAGCAGAAGTTACTCGGTGTTTTAATGAAATTGCACCAATGGAAACAACACTGCAAGAGGTTTTGGTTTCTTGGCTTGGAAGCAACAAACAAACCTTCACCGGGACATATTTTCAGAGTGAGGAACTTCAAGGCTCTCATGGATTCCTACATATAGAAAAACCATTTGGTCCGAGTTCATTCAACAGGAACTACTCCAAAGAAATTTCGAGTCAGAGGAAAGTGAATGACAAAGAAACAGAAGATGGGGTCAACCAGATTAAAGTTCTCCATCTTTGGCATAACGCCATTAAGAAAGATTTGAAAGAAATTCTGCAAGAGCTTTATCTAATAAGAAATTCAGGTTCTGGATGTTCTCAAAATTTAGACTCAATACTTATCCAGCTAAAATTCTTGGCTGATGTCCTCATCATTTACAGCAATGCTCTTAAGAAATTCTTTCATCCTGTACTGAAGAAACATGCCCATAAACGACTTTCCAAGTCTACTGAACATTTCCTTGGTGAAAGTCACATTGAAGATTTACAACAGTTGCTATTCTATAACTCAGAAAGTGAAATGCCTTTGACGAAATTTGTAGAGAAGCTTTGCGGAAAACTTGAACTATTTGTATCAACAGTCAACAAACAATTCTCTTTTCAAGAAATTGAGGTGTTTCCTATCTTTAGAAAGAACTGCAGAAATGGAATGCAAGTGAGACTTCTAAGCTTGAGCATGCTTATGATGCCACTTGGGTTACTAAAATGTGTTATAACTTGGTTCTCAGTTCACTTGTCTGAAAAAGAATCCAGGACCATTCTCTATTGCATAAAGGAGGGAAATAATTCTGTCAGTAAAGCTTTTGCACCATTGTTACATGAATGGTTCCGCATTGGTTATTCAGGTAAAACCTCAATTGAAAAGTTCCGACAGGACTTGCAGCATATGTTCAAAAGAAGACACTCTTTTTCATCCGAGAAAATGAAGGAAGCTTGTGGGTTTTCATTTTTAAATTCTGACAAGCAGCCACATAAAAGTTGTGGCAAGAATTGTTTGTCCTATTCCTCATCTTCTGGATCCAAAAATGTGAGCAAGTATGAGACACCATACTCCACAGGAATTAATTTGCACATATTTTTCCCTGACACTGCTATGAAGTTAAATCAGCATCCAAGACTTCATGCAGCAAATTCTTCTTCTGTTTCATTTCTTAATGATCCAAAACCAATTGACCTGATATTTTTCTTTCACAAGGCTATTAAGAAAGATTTGGATTACCTAGTTCATGGCTCAGCTCAGTTAGAGGGGCATGATGATTTGGTTACAGATTTCCAAAAACGGTTCAATCTCATATATTTTCTTCATCAAATCCATAGTGATGCAGAGGAGGAAATAGTGTTTCCAGCTTTGGAGGCAATAGGCCAGCTAAAAAACATTAGCCATGCCTACACCTTTGATCACAAACATGAAGTTGAGCACTTTGGTAAAATGTCTCGCATTCTTGATAAGATTTCTGAATTACATCTTTTAGTTTCTACTACTGATTCAAAGATAAGGGACAAGAGAGTGCTAAGGCGTCATCATTTAATCAGGAAGCTGCAAGAAAGGTGCAAATCAATGCATAAGTTACTTTCTGATCATATAAACCGCGAGGAAATAGAAATTTGGCCTATAATTAGAGAATTCTTCTCGAACCGGGAGCAAGGGAAGATCATAGGGTGCATACTTGGAAGAATAAGTGCAGAAATATTACAAGATATGATACCTTGGCTAATGGCATCTTTAACACAGGAAGAACAACATGTTTTAATGTTCTTATGGTCCATGGCTACTAAGAATACAATGTTTGATGAATGGTTAGGTGAATGGTGGAATGGGTACAGTGTAGCTAAGGCAGCAGATGGATCAAATGATGCCCCTCTACAGAATGTTGAGCCACTGGAAATTATATCCAAATATTTGTCAGAAGAGGTTCTTAATGCATTACAAGAAGAATCGTCGGCCAACGAAAGCATAACTTTTTTGCAGAAGGATCTTATTGGCAATAACTTTGAGTTGTCCAACAACAATGTTGATGACAATGTTAAGGATTATAATGCAGCACAAAGTTATAGTCAATGTTCAGAATGCACAAATCATTTTCATGATATTAAGAAAAATGGCTGCAATGAAGTAAAACCAGTGGGCACTATGACAAGTCAGTCTGTTCAACATTTTGATTTTGACAAGTCTGGGCATTATGACAGACTTCTGAAATTGAGTCAAGATGATCTCGAGAAGGTAATAAGAAGGGTATCTCGTGACTCTTGCCTAGACCCTCAGGAAAAGTCGTACATAATACAGAGCCTACTTACGAGCCGTTGGATTATTAGTCAGAAGATCTCTTCTATGGAAGCCAATATCAAAAGCGATGGACAGGAATTCCCTGGGAAACATCCATCTTACAAGGATCCTCATGAACAAATCTATGGTTGCAAACACTACAAGAGGAACTGTAAGCTTTTGGCTCCCTGTTGCAACCAACTTCATGCTTGCATACATTGCCATGATGAAGCATCAGATCATTTAATTGACAGAAAATCAATTACAAAGATGATGTGTATGAAATGCTTGATGATTCAACCAATCAATTCCACATGCTCATCAGTTTCTTGCCGCAATTTATCCATGGCAAAATATTACTGCAGGATCTGCAAGATATTTGAAGATGAAAGGGAAATTTACCATTGTCCCTATTGCAACTTATGCCGAGTTGGAAAGGGTTTGGGTGTTGACTATTTTCATTGTATGAATTGCAATGCTTGTATGTCTCGTTCTCTTATGATACATACATGCAGAGAGAAATCTTTAGAGGAAAACTGTCCGATTTGTCATGAATATATCTTCACATCCTGCTCTCCAGTAAAAGCCCTCCCATGTGGTCATGCGATGCACTCAACATGTTTCAAGGAATATACCTGCTTTAGCTATACCTGCCCAATATGTAGCAAGTCACTTGGAGACATGCAGGTCCTTTTTAGGATGTTAGATGCACTATTGGCCGAGCAGAAAATGTCTGACGAGTTTTCGGGTCAAACTCAGGTTATTTTATGTAATGACTGTGAAAAGAAAGGAGCAGCTCCCTTCCACTGGCTTTACCACAAATGCTCTTGTTGTGGTTCCTATAACACTAGAGTTATATGA 3816 0.3836 MGGGDPSLSDMEEEEEENDVMVNDSVDILSRFPIFDAPILLFVCFHQALRSELDQLRPFAETASSLEHDPNRCREIVFKLQHRFQFLKLAFKYHCAAEDEIIFHALDIHVKNVVCTYSLEHNSTNGLFDSILHFLDELMGSSENISKLFRELVYCIDILQTSVYQHMLKEEEQVFPLLIQKLSTKEQASLVWQFICSVPIMLLEEVLPWMVSFLSADKQAEVTRCFNEIAPMETTLQEVLVSWLGSNKQTFTGTYFQSEELQGSHGFLHIEKPFGPSSFNRNYSKEISSQRKVNDKETEDGVNQIKVLHLWHNAIKKDLKEILQELYLIRNSGSGCSQNLDSILIQLKFLADVLIIYSNALKKFFHPVLKKHAHKRLSKSTEHFLGESHIEDLQQLLFYNSESEMPLTKFVEKLCGKLELFVSTVNKQFSFQEIEVFPIFRKNCRNGMQVRLLSLSMLMMPLGLLKCVITWFSVHLSEKESRTILYCIKEGNNSVSKAFAPLLHEWFRIGYSGKTSIEKFRQDLQHMFKRRHSFSSEKMKEACGFSFLNSDKQPHKSCGKNCLSYSSSSGSKNVSKYETPYSTGINLHIFFPDTAMKLNQHPRLHAANSSSVSFLNDPKPIDLIFFFHKAIKKDLDYLVHGSAQLEGHDDLVTDFQKRFNLIYFLHQIHSDAEEEIVFPALEAIGQLKNISHAYTFDHKHEVEHFGKMSRILDKISELHLLVSTTDSKIRDKRVLRRHHLIRKLQERCKSMHKLLSDHINREEIEIWPIIREFFSNREQGKIIGCILGRISAEILQDMIPWLMASLTQEEQHVLMFLWSMATKNTMFDEWLGEWWNGYSVAKAADGSNDAPLQNVEPLEIISKYLSEEVLNALQEESSANESITFLQKDLIGNNFELSNNNVDDNVKDYNAAQSYSQCSECTNHFHDIKKNGCNEVKPVGTMTSQSVQHFDFDKSGHYDRLLKLSQDDLEKVIRRVSRDSCLDPQEKSYIIQSLLTSRWIISQKISSMEANIKSDGQEFPGKHPSYKDPHEQIYGCKHYKRNCKLLAPCCNQLHACIHCHDEASDHLIDRKSITKMMCMKCLMIQPINSTCSSVSCRNLSMAKYYCRICKIFEDEREIYHCPYCNLCRVGKGLGVDYFHCMNCNACMSRSLMIHTCREKSLEENCPICHEYIFTSCSPVKALPCGHAMHSTCFKEYTCFSYTCPICSKSLGDMQVLFRMLDALLAEQKMSDEFSGQTQVILCNDCEKKGAAPFHWLYHKCSCCGSYNTRVI* 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3870 1271 CDD Hr-like 622 768 - -
Mtr4g3870 1271 Pfam Hemerythrin HHE cation binding domain 46 178 IPR012312 -
Mtr4g3870 1271 ProSiteProfiles Zinc finger RING-type profile. 1165 1207 IPR001841 -
Mtr4g3870 1271 Pfam CHY zinc finger 1036 1111 IPR008913 GO:0008270
Mtr4g3870 1271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1158 1209 IPR013083 -
Mtr4g3870 1271 CDD RING-H2_Pirh2 1164 1207 - -
Mtr4g3870 1271 ProSiteProfiles Zinc finger CTCHY-type profile. 1101 1164 IPR017921 -
Mtr4g3870 1271 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 30 1271 - -
Mtr4g3870 1271 Gene3D nmb1532 protein domain like 302 452 - -
Mtr4g3870 1271 Gene3D nmb1532 protein domain like 37 196 - -
Mtr4g3870 1271 Gene3D nmb1532 protein domain like 616 789 - -
Mtr4g3870 1271 CDD Hr-like 45 176 - -
Mtr4g3870 1271 SMART ring_2 1165 1206 IPR001841 -
Mtr4g3870 1271 SUPERFAMILY RING/U-box 1154 1211 - -
Mtr4g3870 1271 SUPERFAMILY CHY zinc finger-like 1027 1093 IPR037274 GO:0008270
Mtr4g3870 1271 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 30 1271 - -
Mtr4g3870 1271 SUPERFAMILY Zinc hairpin stack 1102 1156 IPR037275 -
Mtr4g3870 1271 Pfam Zinc-ribbon 1212 1269 IPR039512 -
Mtr4g3870 1271 ProSiteProfiles Zinc finger CHY-type profile. 1029 1098 IPR008913 GO:0008270
Mtr4g3870 1271 Gene3D - 1236 1271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3870 Mtr-Chr4 52441389 52452823 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3870 37 863 C2H2 Transcription Factor Family AT3G18290 31.874 4.36e-124 413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3870 4 52441389 52452823 Mtr4g3870 4 52441389 52452823 ECH