Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3857 ATGTCTTCTGCTTCAACCACCGCAGACTCCGCCGAATTCATGCTCTTCGGAGTTAGAGTCGTCGTTGATTCTATGAGAAAGAGTGTCAGTATGAACAATCTCTCACAATACGAACAACAACCTCAAGACAACATCATCATCAAGGATGATAATATCAACAAAGACGTTATCACCGCCGGTTACGCCTCCGCCGATGACGCCGTTCCTCAAAACTCCGCCAGAAACCGCGACCGCGAACGTAAACGAGGGATTCCGTGGACGGAGGAAGAGCATAAGTTGTTCTTGGTTGGATTGCAGAAAGTTGGAAAAGGTGATTGGAGAGGAATCTCAAGGAACTATGTGAAAACAAGAACACCTACGCAGGTTGCAAGTCATGCTCAAAAGTACTTTCTCCGCCGAAGTAATCTCAATCGCCGTCGCCGTAGATCCAGTCTCTTTGATATCACCACCGACACGGTATCTGCAATTCCAATGGAGGAAGAACAGGTCAAGAATCAAGATAGTGTTTCCCAGTTACAGCCACTGTGCCCTGCAGTCCCTGAAACTAGAAAAATCAATGGATTTCCTTTTATGTCAGTATATGAGTTGGGTGTTAATGAGAGTACTCCAATGGAAGAACTCACTCTTGGACAAGGAAATGTGAAACACAATTTTCAAACCAACAGTCTATTCAATCCAATTCCTTTTGTTGTTTCAGATCCCAAAGCTTCCATTGTGTCTGATATCACCTCTAGTTCATCCATTGACCCTCCAACACTTTCCCTCGGTCTTTCCTTCTCGTCCGATCAAAGGAAGACATCATCAACACATTTACATGCAATGCCATGTTTCAAAAATGGAGATAATATCATAAGTGTTGCTTAA 864 0.4375 MSSASTTADSAEFMLFGVRVVVDSMRKSVSMNNLSQYEQQPQDNIIIKDDNINKDVITAGYASADDAVPQNSARNRDRERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVKNQDSVSQLQPLCPAVPETRKINGFPFMSVYELGVNESTPMEELTLGQGNVKHNFQTNSLFNPIPFVVSDPKASIVSDITSSSSIDPPTLSLGLSFSSDQRKTSSTHLHAMPCFKNGDNIISVA* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3857 287 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 11 287 - -
Mtr4g3857 287 SMART sant 82 132 IPR001005 -
Mtr4g3857 287 Pfam Myb-like DNA-binding domain 85 130 IPR001005 -
Mtr4g3857 287 MobiDBLite consensus disorder prediction 63 83 - -
Mtr4g3857 287 Gene3D - 84 136 - -
Mtr4g3857 287 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 81 132 IPR006447 GO:0003677
Mtr4g3857 287 PANTHER KIN2 11 287 - -
Mtr4g3857 287 CDD SANT 85 130 IPR001005 -
Mtr4g3857 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 78 134 IPR017930 -
Mtr4g3857 287 ProSiteProfiles Myb-like domain profile. 78 130 IPR001005 -
Mtr4g3857 287 SUPERFAMILY Homeodomain-like 80 135 IPR009057 -
Mtr4g3857 287 ProSiteProfiles SANT domain profile. 86 134 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3857 Mtr-Chr4 52288222 52290484 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr4g3857 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3857 - - gmx:778059 352.443