Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3852 ATGGGCCGCGCAAAAATACCTATGAAATACATACAAAGTGCAAAATCTCGCAAAATAACTTTCAAACAAAGAAAGCAAGGATTAGAAAAGAAAATTTCTGAATTTTGTAAGAAGTCTGGGGCAAAGGCTTGCTTTATTGTGTATGATGGTGATCATAATACTGTTGAACCAATGACATGGCCAGAAGACCTTATAAGTGTAAACTCCTTGCTTCAAGAGTATCAAAATCAAAAGATTGAGAAAACTCCTAAGATATTTGATGTCAAGGACTACTTTGAAAATAAGAAAGAAAAGGTTGAAACAAAGATTAACAAAGTGCGCAGAGATATCATCAGTAACATCTATCCAACTTGGCATCCACATTTTAGTAACTTGGATGGGAATCAACTCAGAGACTTCATTGCTACTATAAATGCTAAGATTCAAGCTTGCAATCACAAAATCAGCATGTTGAAAAATATGCAACAAATTGAAACTAACACCTTGGATATATGTGAGATGATTGATTTTTCTGATCTTGGTGATTTTCCTCCTAGTTCACCATTAAACCAACTTAATGGGCTTGTGGAGATGAATGACCAAGTAGTTAATCCTGATTATACAAGTGAGATTGTGGATTTCACAAGTCTTGGTGATTTGCCTCCTAATTCATCATCAAACCAACTTAGTCAACATGTTAATCTTAATGACTGGAATCAACTAGATGATGGTGTTTTGTGCTGGGATTGTCAACCTGATGAGTTTGTTTGGAAAGATCTTTCTTTTTAA 768 0.3464 MGRAKIPMKYIQSAKSRKITFKQRKQGLEKKISEFCKKSGAKACFIVYDGDHNTVEPMTWPEDLISVNSLLQEYQNQKIEKTPKIFDVKDYFENKKEKVETKINKVRRDIISNIYPTWHPHFSNLDGNQLRDFIATINAKIQACNHKISMLKNMQQIETNTLDICEMIDFSDLGDFPPSSPLNQLNGLVEMNDQVVNPDYTSEIVDFTSLGDLPPNSSSNQLSQHVNLNDWNQLDDGVLCWDCQPDEFVWKDLSF* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3852 255 Coils Coil 89 109 - -
Mtr4g3852 255 Coils Coil 11 31 - -
Mtr4g3852 255 Gene3D - 14 102 IPR036879 GO:0003677|GO:0046983
Mtr4g3852 255 PANTHER PROTEIN, PUTATIVE-RELATED 3 250 - -
Mtr4g3852 255 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Mtr4g3852 255 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr4g3852 255 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Mtr4g3852 255 CDD MADS_SRF_like 2 78 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr4g3852 255 PANTHER MADS BOX PROTEIN 3 250 - -
Mtr4g3852 255 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3852 Mtr-Chr4 52233379 52235013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3852 1 212 Type I MADS-box Gene Family AT5G55690 28.182 4.41e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr4g3852 SRF-TF 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3852 - - mtr:MTR_4g107170 531.561