Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3849 ATGGATGCCGCCGGCGAGATTTTCCGTTCGAATTTGACGGAGTTAATGGAGGAATCACCTTCAGGTGCAGGTGAATTGCATGTGCTTGCTGTTGATGATAGTCTTGTTGATCGTAAAGTGATTGAACGTTTGTTGAAGATTTCTTCATGCAAAGTTACGGTTGTTGAGAGTGCAAGAAGAGCTCTTCAGTTTTTGGGATTGGATGGAGAGAACAGCGATGTTGCATTTGATGTAAGTAAATTATGTTTCTGGATTATTAACTTTGTTTGGATGTTTGTTAATTTGAAATTTGTTGATGTTTATGTTGTTTTGTTATGGTGGCAGGCTGTGAAGGTTAATTTGATAATGACGGATTATTCCATGCCTGGGATGACAGGATATGAATTACTCAAGAAAATCAAGGAGTCTTCTGTTTTTAGAGAGATTCCAGTGGTGATCATGTCGTCGGAGAATGTTTTGACTCGAATTGATAGGTGTTTGGAGGAAGGAGCAGAGGATTTTTTGTTAAAGCCAGTCAAATTGTCAGATGTAAGACGCCTGAAAGATTTCATCATGAGAGGTGAAGTGAAGGATGGCGAGAAATGTTCTCTCAAAAGAATGCGATCATCAGATGATTGTAGTCCATGTCCATCTCTATCAACTACATTCTCACCAATGCGTCATTCATGTGATCCACCATCGTCGGTGTTCTCACCACTCTCACCATCAACATTATCCTCTAAGAAATCTAGACTGTGA 738 0.3984 MDAAGEIFRSNLTELMEESPSGAGELHVLAVDDSLVDRKVIERLLKISSCKVTVVESARRALQFLGLDGENSDVAFDVSKLCFWIINFVWMFVNLKFVDVYVVLLWWQAVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMRGEVKDGEKCSLKRMRSSDDCSPCPSLSTTFSPMRHSCDPPSSVFSPLSPSTLSSKKSRL* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3849 245 CDD REC_typeA_ARR 28 180 - -
Mtr4g3849 245 SUPERFAMILY CheY-like 103 180 IPR011006 -
Mtr4g3849 245 MobiDBLite consensus disorder prediction 217 245 - -
Mtr4g3849 245 SUPERFAMILY CheY-like 25 74 IPR011006 -
Mtr4g3849 245 Gene3D - 26 204 - -
Mtr4g3849 245 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 81 IPR045279 GO:0009736
Mtr4g3849 245 PANTHER TWO-COMPONENT RESPONSE REGULATOR 103 245 IPR045279 GO:0009736
Mtr4g3849 245 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 8 81 - -
Mtr4g3849 245 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-LIKE PROTEIN 103 245 - -
Mtr4g3849 245 Pfam Response regulator receiver domain 97 178 IPR001789 GO:0000160
Mtr4g3849 245 SMART REC_2 26 181 IPR001789 GO:0000160
Mtr4g3849 245 ProSiteProfiles Response regulatory domain profile. 27 185 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3849 Mtr-Chr4 52186461 52188526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3849 5 205 Response Regulator Gene Family AT3G48100 56.863 9.71e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr4g3849 Response_reg 1.3e-16 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3849 4 52186461 52188526 Mtr3g2496 3 38918807 38921377 ECH
Mtr4g3849 4 52186461 52188526 Mtr4g3849 4 52186461 52188526 ECH