Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3847 ATGGCTGCTTCCTCCTCCGATCCTCCTTCACGACACCACACTTACGACCGTAAACAAAAATCCCTTGGCCTCTTATGCACCAATTTCTTGAGCTTGTATAACAAAGATGATGTTCGTTTAATTGGTCTCGACGATGCTGCCGCCAAATTAGGTGTTGAGAGAAGACGGATCTATGATATTGTCAATGTTCTCGAAAGCATCGGGGTTCTTGCAAGAAAAGCCAAGAATCAGTATACCTGGAAAGGTTTTGCGGCAATTCCTGTTGCTCTACAGGAGCTTAAGGAAGAGGGTTTATGGCAGAATCTCAATTCTTCACAAGAAGGTGCCAATGAAGATGTGAAGGTATCGGATGAAGAGGATGAGGATGAATTGTTATCCCAAACCACTGGAAGTCAGGGTGAATCATTATCCCAACCCACTGGAAGTCAGAATGACAATCTAAACCCTAATTCCGCTTTTCCCAGATCTTTGAAAAATGACAGAAGGGAAAAATCTCTGGCGCTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGTTCCAACCTGGAAATGATATCGCTTGATGATGCAGCAAGGTTGTTGCTTGGAGATGCATATAATTCATCAACAATGAGAACAAAAGTCAGGCGCCTTTATGATATTGCAAACGTGCTAACCTCCATGAACCTTATTGAGAAGACCCATACCACAGATACAAGAAAACCAGCATTCAGGTGGCTAGGCTTAAAAGGGAAGACATTGAATGAGGCATCACTTTACAATTCAAAACAAAATGAGTCTAGGAAAAGGGCGTTTGGAAATGATGTCACAAACATAAGCTTTGCCAGGAATAGAATGGACTTGTTCATGGGCGGGGACTTTAAGAAGCAAAAGACAATGGAAAATGATAGTGGACTATGTCAGGAAGATGTGAAACAAGGCATAAAACAGACTTCAGCAGCTAACTATCAATTTGGTCCTTTTGCTCCTGCCTTTGTATCCAAAGCTGGAAGCTCTGAGAATAAAGTGAAGCAGGTGCATGACTGGGAGAGTCTCGCTACTGAACATTGCCCTCAGTATCAAAACCAAGCTTTGAAAGAACTTTACTCTCATTACATGGAAGCATGGAAATCTTGGTACTCTGAAGTTGCTGGGAAGAGGTCAACGCAAGTTTTGTAG 1158 0.4231 MAASSSDPPSRHHTYDRKQKSLGLLCTNFLSLYNKDDVRLIGLDDAAAKLGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFAAIPVALQELKEEGLWQNLNSSQEGANEDVKVSDEEDEDELLSQTTGSQGESLSQPTGSQNDNLNPNSAFPRSLKNDRREKSLALLTQNFVKLFVCSNLEMISLDDAARLLLGDAYNSSTMRTKVRRLYDIANVLTSMNLIEKTHTTDTRKPAFRWLGLKGKTLNEASLYNSKQNESRKRAFGNDVTNISFARNRMDLFMGGDFKKQKTMENDSGLCQEDVKQGIKQTSAANYQFGPFAPAFVSKAGSSENKVKQVHDWESLATEHCPQYQNQALKELYSHYMEAWKSWYSEVAGKRSTQVL* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3847 385 Gene3D - 12 84 IPR036388 -
Mtr4g3847 385 Gene3D - 156 243 IPR036388 -
Mtr4g3847 385 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 8 376 - -
Mtr4g3847 385 SUPERFAMILY "Winged helix" DNA-binding domain 16 80 IPR036390 -
Mtr4g3847 385 Pfam E2F/DP family winged-helix DNA-binding domain 18 82 IPR003316 GO:0005667|GO:0006355
Mtr4g3847 385 Pfam E2F/DP family winged-helix DNA-binding domain 163 241 IPR003316 GO:0005667|GO:0006355
Mtr4g3847 385 MobiDBLite consensus disorder prediction 104 156 - -
Mtr4g3847 385 PANTHER TRANSCRIPTION FACTOR E2F 8 376 IPR015633 GO:0000978|GO:0006357
Mtr4g3847 385 SMART E2F_TDP_2 17 82 IPR003316 GO:0005667|GO:0006355
Mtr4g3847 385 SMART E2F_TDP_2 161 241 IPR003316 GO:0005667|GO:0006355
Mtr4g3847 385 MobiDBLite consensus disorder prediction 126 155 - -
Mtr4g3847 385 SUPERFAMILY "Winged helix" DNA-binding domain 163 242 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3847 Mtr-Chr4 52164162 52167983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3847 12 377 E2F-DP Transcription Factor Family AT3G48160 55.291 2.60e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Mtr4g3847 E2F_TDP 1e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3847 K09391 - gmx:100795252 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3847 4 52164162 52167983 Mtr4g3847 4 52164162 52167983 ECH