Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3831 ATGGGTAGTCCTGAACCCGGTTTCGAAGATTTTCTTGAAGAGAAGAAGCGCGTTAGGAACCCTTTTGTTCCCATTGGCGCACTTATTACTGCCGGTGTACTAACGGCTGGCTTAATCAGCTTTAGACAAGGTAATTCTCAATTAGGTCAGAAGTTAATGAGGGCTCGTGTGGTTGTCCAAGGTGCTACAGTGGCACTCATGGTTGGCACTGCCTATTATTATGGAGACAATCCTTGGCAAAAAAAATGCTTGAGCCTGAAGGTGAATGTCATGGCTTCTCGGAGGCCCTTCTGCACAACACATTATTGTATTAATGCAATGCCATGGATGATGAGTGATTATACAGTGGAGACAATAAATGATGGACTCACTGAATTCAATGTGGAGTTTCATGGTCCAAAAGAAAGCCTTTATGAAGGTGGAGTCTGGAAAATTCGTGTTGAACTTCCTGATGCATATCCATACAAATCCCCTTCTATCGGCTTTGTGAACAAAATATACCACCCGAATGTTGATGAGTTATCTGGCTCTGTATGCTTGGACGTCATTAACCAATCATGGAGTCCAATGTTCGGATTTTATGGAATCTCCACTTTCTTAATGCCTATAGATATAACCAAGGTTTCTACTTTTTCAGATCTTCTAAATGTCTTTGAAGTTTTTCTTCCACAACTCTTGCTTTATCCAAATGCATCAGATCCTTTGAATGGCGATGCAGCATCCTTAATGATGAAGGATAAAAAGCTGTATGACCAAAAGGTTAAAGAGTATTGTGAGCGGTATGCTAAGAAGGAACACATTACCAACGGCACAGCTGATGACGAGGAGAGTGATGAGGAGGACATCAGTGAAGCAGAAACTCAATCCAGTGATGATGAAATTCCTGGCCAAAAAAGATTAGTTTTCACATTGTGCTACATGGCATCAGCCGCATCTCCGTCTCCTCAACCACCTCTCACTGTGTTTCAAGCTCCTCCTATTGATGGCAGTATCAGTTACGAGAAAGTAACAACAACTCCTTCATCAATAAGCAGAATCAGTCCAGTTATTTTGTTGGTTATAATAGTACTAGCAATTATCTTCTTTCTTTATGGACTTTTCCAATTAATTATATGGCTTGTGATAAAAAGACCATCCTCTTCATCTCATTATAATTCCAACAGGTTTCAAGAATCGACTCGAACCCTTGCGCTTCAGAGGCAACTACAAAACCTATTCCATTTACATGATTCAGGTCTAGAACAATCTCTCATAGACACTCTTCCTCTTTTCAAGTACCAAGATTTATTGGGTTTGAAGGAACCTTTTGATTGTGCTGTGTGTCTATGTGAGTTTTCTGAGCAGGAGAAGCTGAGGTTGGTTCCTATATGCCGCCATGCTTTTCATATGAATTGTCTTGACACATGGCTTCTCTCAAACTCTACTTGTCCTCTTTGTAGAGCAAATATCTCTAGCTCTAGTTTTCCTTTGGAGAATGTTGATGATTCTTTGGTTAGTCAAAGAGAAATAATCGTAGAAGAAGAAAAAGTTGGGAAAAGGGTGTTTTCTGTGAGACTTGGAAAGTTCAGAAATAATGGATTGGAGGATGGTAGTAGTCCTAGTTTGGATGAGAGAAGATGTTATTCAATGGGTTCATATCAATATCATGTTCTTGGTGATTCAAATTTGCAAGTGGTTTTGTCACAATCTTGTTGTGATGATGATGACTTAAGAAGTGAAGAAAGTGGGAATGTGGAGGGGAAGAGGATAGGGAACAGAACCAAAGGTGAAAGTTTTTCTGTTTCTAAGATATGGCTTTGGTCTAAGAAGAGAAAATTTACTAGCTCTAATGTTGATTTTCCTTGA 1845 0.3967 MGSPEPGFEDFLEEKKRVRNPFVPIGALITAGVLTAGLISFRQGNSQLGQKLMRARVVVQGATVALMVGTAYYYGDNPWQKKCLSLKVNVMASRRPFCTTHYCINAMPWMMSDYTVETINDGLTEFNVEFHGPKESLYEGGVWKIRVELPDAYPYKSPSIGFVNKIYHPNVDELSGSVCLDVINQSWSPMFGFYGISTFLMPIDITKVSTFSDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDQKVKEYCERYAKKEHITNGTADDEESDEEDISEAETQSSDDEIPGQKRLVFTLCYMASAASPSPQPPLTVFQAPPIDGSISYEKVTTTPSSISRISPVILLVIIVLAIIFFLYGLFQLIIWLVIKRPSSSSHYNSNRFQESTRTLALQRQLQNLFHLHDSGLEQSLIDTLPLFKYQDLLGLKEPFDCAVCLCEFSEQEKLRLVPICRHAFHMNCLDTWLLSNSTCPLCRANISSSSFPLENVDDSLVSQREIIVEEEKVGKRVFSVRLGKFRNNGLEDGSSPSLDERRCYSMGSYQYHVLGDSNLQVVLSQSCCDDDDLRSEESGNVEGKRIGNRTKGESFSVSKIWLWSKKRKFTSSNVDFP* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3831 614 CDD RING-H2_PA-TM-RING 437 480 - -
Mtr4g3831 614 SMART ubc_7 100 263 - -
Mtr4g3831 614 Gene3D - 20 79 - -
Mtr4g3831 614 CDD UBCc 110 258 IPR000608 -
Mtr4g3831 614 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 413 487 IPR013083 -
Mtr4g3831 614 MobiDBLite consensus disorder prediction 268 293 - -
Mtr4g3831 614 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 310 614 - -
Mtr4g3831 614 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 310 614 - -
Mtr4g3831 614 ProSiteProfiles Zinc finger RING-type profile. 438 480 IPR001841 -
Mtr4g3831 614 SMART ring_2 438 479 IPR001841 -
Mtr4g3831 614 SUPERFAMILY UBC-like 111 265 IPR016135 -
Mtr4g3831 614 SUPERFAMILY RING/U-box 417 485 - -
Mtr4g3831 614 ProSiteProfiles HIG1 domain profile. 1 85 IPR007667 -
Mtr4g3831 614 Pfam Hypoxia induced protein conserved region 20 69 IPR007667 -
Mtr4g3831 614 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 93 263 IPR000608 -
Mtr4g3831 614 MobiDBLite consensus disorder prediction 272 288 - -
Mtr4g3831 614 Pfam Ring finger domain 437 480 IPR001841 -
Mtr4g3831 614 Pfam Ubiquitin-conjugating enzyme 113 257 IPR000608 -
Mtr4g3831 614 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 167 183 IPR023313 -
Mtr4g3831 614 Gene3D Ubiquitin Conjugating Enzyme 104 277 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3831 Mtr-Chr4 51999883 52011584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3831 344 605 C3H Transcription Factor Family AT2G18650 40.367 1.51e-45 165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3831 4 51999883 52011584 Mtr4g3831 4 51999883 52011584 ECH