Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3824 ATGACTAGTACTCATCTTACTAATCAAAGGGATCGCCGTATCCTATCATTCCCGGCGGTTCACCCTTGCGAAAACATATCTCCCACAACACTCATCACTTCTCTAATCAATCTTTCACAAACTATATCCAATTTCCAACCTCAAATATTCCCAACACAAAAACGTAACGCAAGAGAAACTATACGTCAAATTACTATAATTTCAATTTTCCTCAACGAAATTAAAGACCATGGTTCCATTATTCCTAACTCAATTATCCTATGCTTTTCGGAGCTTCACTTCACTTTACAAAAGATTCATTTCTTAATGCAAGATTGTACTTTAGAAGGTTCTAGTCTCTTATTGCTCGCGAAATCTCAACACGTGGCGTCTCAGCTTCGTTCTCTTATTCGCGCAGTGGCTATTACATTAGATATTTTGCCTTTACACAGAGTCGAAATTTGCGACGAAGTCAAGGAGTTAGTTGAATTGGTAGCTAAACAAGCTAGGAAAGGTAAATTCGAAGTAGACCCCAACGACGAGGTTGCGTCCAAAAAACTTCATTATGTTTTGCATCAATTCGAGAGAGGAACTGAACCAAACTTGAACACCATGCATGAAATCCTTCATTACCTTAAAATCAAGAGCTGGAATGATTGTGACAGAGAAATCAAATTCTTAGAAAACGAGATAAGTTTCTTGGAGGATCGGAACTGCGACGAACGAGAGGTTCCGTTGTTGAGTTCTTTGATTGGGTTTTTAAGCTACTGTAGGGCAGTGATATTCGAAGATTTTGATGAAAATTTGAATAAACTCGAAGCTCGACGCAGCACGGAGATGATAACTGTTAACTGTTTGAATCCAGAGGATTTTCGTTGTCCAATTTCACTCGAACTAATGACTGATCCAGTAACAGTTTCAACAGGACAAACCTACGATCGTGCTTCAATTCAGACATGGCTTAAAGCAGGAAACAAAACATGCCCTAAAACAGGGGAGAATATTAAAAACACAGAGTTAGTCCCAAACACAACGCTGAAGAGACTTATCCAACAATTTTGCAGTGATAATGGTATTTCATTCACAAGATTTTCTAACCGTAACCGTGACATAACGAGGACGATTTTACCCGGTAGTTCTGCAGCAGCACATGCTACGCAGTTTCTGTCATGGTTTCTAACACGAAGGCTCGTGTTCGGAACAGAGCAACAGAAGAATAAAGCAGCTTACGAGATTCGTTTGTTAACAAGGTCAAGCATTTTCAACAGAGCTTGTTTGATTGAAGTTGGAACTGTGCCACCACTGTTGGATCTTTTAGCTACGGAGGATAAAACCACTCAGGAGAATGCAATCTCTGCTTTACTGAAGCTTTCAAAGTATGCAACCGGGCCTGAAAATATAATAGACCATAACGGTTTAAAGCCCGTTGTGTATGTACTGAAAAATGGACTTAGTCTTGAAGCCCGTCAAATTGCAGCAGCTATAATATTCTATCTTTGTTCAGTGAAAGAATATAGAAAATTAATAGGTGAAAATCAAGATGTGATTCATGGTTTAGTTGAATTGGCTAAAGAAGGAACAACCTGCGGAAAAAAGAATGCAGTGGTTGCGATTTTTGGACTTCTTTTGCTTCCTAGGAATCATCAACGTGTGCTTGAAGCCGGTGCTGTTCACGCGCTTGTTTCTATTTTGAATACCTTGTGCAACAAGGAAGAGCTTGTTACTGAAACTCTGGCTGTTCTTGCGGCACTTGCTGAGAATTTTGATGGAGCTAATGCTGTTTTGGAAGCTTCTGCATTGCCGTTGATTACTGGGCTGTTGCGATCTGCTCCTTCGCGTGCTGCAAAGGAACATTGTGTTTCGATATTGTTGTCTCTATGTGTTAATGGTGGTGTTGATGTTGCTGGTGTTCTTGCTAAGGATGTTACACTTATGCCTTTGCTCTATTCGCTTCTTACTGATGGTACTTCTCATGCTGCTAAGAAAGCGCGTTTTCTCATTAAAGTTCTGCAGGATTTCAACGAAACTGCAACTTCTCGATTGAAAGGTTCCGCAATTCTACGCCAATTGAATGTGTTAGAACTTAGAAATTAG 2073 0.3994 MTSTHLTNQRDRRILSFPAVHPCENISPTTLITSLINLSQTISNFQPQIFPTQKRNARETIRQITIISIFLNEIKDHGSIIPNSIILCFSELHFTLQKIHFLMQDCTLEGSSLLLLAKSQHVASQLRSLIRAVAITLDILPLHRVEICDEVKELVELVAKQARKGKFEVDPNDEVASKKLHYVLHQFERGTEPNLNTMHEILHYLKIKSWNDCDREIKFLENEISFLEDRNCDEREVPLLSSLIGFLSYCRAVIFEDFDENLNKLEARRSTEMITVNCLNPEDFRCPISLELMTDPVTVSTGQTYDRASIQTWLKAGNKTCPKTGENIKNTELVPNTTLKRLIQQFCSDNGISFTRFSNRNRDITRTILPGSSAAAHATQFLSWFLTRRLVFGTEQQKNKAAYEIRLLTRSSIFNRACLIEVGTVPPLLDLLATEDKTTQENAISALLKLSKYATGPENIIDHNGLKPVVYVLKNGLSLEARQIAAAIIFYLCSVKEYRKLIGENQDVIHGLVELAKEGTTCGKKNAVVAIFGLLLLPRNHQRVLEAGAVHALVSILNTLCNKEELVTETLAVLAALAENFDGANAVLEASALPLITGLLRSAPSRAAKEHCVSILLSLCVNGGVDVAGVLAKDVTLMPLLYSLLTDGTSHAAKKARFLIKVLQDFNETATSRLKGSAILRQLNVLELRN* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3824 690 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Mtr4g3824 690 Coils Coil 210 230 - -
Mtr4g3824 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Mtr4g3824 690 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Mtr4g3824 690 PANTHER U BOX DOMAIN-CONTAINING 8 673 - -
Mtr4g3824 690 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Mtr4g3824 690 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Mtr4g3824 690 PANTHER OS07G0532750 PROTEIN 8 673 - -
Mtr4g3824 690 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 592 IPR000225 GO:0005515
Mtr4g3824 690 Pfam Armadillo/beta-catenin-like repeat 415 451 IPR000225 GO:0005515
Mtr4g3824 690 SUPERFAMILY ARM repeat 394 664 IPR016024 -
Mtr4g3824 690 CDD RING-Ubox_PUB 284 326 IPR045210 -
Mtr4g3824 690 SMART arm_5 453 494 IPR000225 GO:0005515
Mtr4g3824 690 SMART arm_5 411 452 IPR000225 GO:0005515
Mtr4g3824 690 SMART arm_5 580 621 IPR000225 GO:0005515
Mtr4g3824 690 SMART arm_5 537 579 IPR000225 GO:0005515
Mtr4g3824 690 Gene3D - 386 685 IPR011989 -
Mtr4g3824 690 SUPERFAMILY RING/U-box 281 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3824 Mtr-Chr4 51958373 51960753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3824 5 672 U-box Gene Family AT1G60190 39.676 2.45e-166 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3824 - - mtr:MTR_4g107010 1310.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3824 4 51958373 51960753 Mtr3g2476 3 38694868 38697636 ECH
Mtr4g3824 4 51958373 51960753 Mtr4g3824 4 51958373 51960753 ECH