Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3820 ATGGCTATCAGAGGCGTCGATTTCAAGTGGTACGATGGATTTTTCCTCTCCATGCTCGCCACCAGCGTAGTTATTGTTGCAATCAATTGGAAGCGCTATCATTCTTGTACATACCCATTGCATATATGGATTGTGGTGGACTACACTGCTGTGTTCGTTTTCCGGCTCTTGATGTTTGTCGATAACGGCTTTGCCGCCGGAATGGGCTTGGATTTTGGGTGGCAGCAGAGATATGCTCGTTTCTGTGGTAGAGTGGTCGTCCTTTCAATCCTTGGATTGCTTCTTTATCCATTTCTTTGGGCTTGGACTATAATTGGTACCATGTGGTTCAGCAGTGCCAAGAGCTGTTTACCTGAAGAGGGGCAGAAATGGGGATTCCTAATCTGGTTACTTTTTAGCTACTGTGGACTTCTTTGCATTGCTTGCATGTCAGTAGGGAAGTGGTTGACTCGACGACAAGCACACTTAGTGCGTGCCCAACAGGGTATCCCTCTGTCTGAATATGGGATTTTGGTCGATATGATTCGCGTGCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGGGGCATGGGCCAAGATACTGCTTCATATCATCCAGGACTTTACCTAACACCAGCTCAGAGAGAAGCAGTCGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTGAAGGCCGTTCCTACTGATTGCAGTGAATGCCCCATCTGTTTAGAAGAGTTCCGTGTTGGGAATGAGGTTCGTGGGCTGCCTTGTGCACACAATTTTCATGTTGAATGCATTGACGAGTGGCTTAGGCTGAATGTGAAGTGTCCTAGGTGCCGTTGCTCAGTGTTCCCAAATCTTGATCTTAGTGCCCTGTCCAATCTCCGTCCTGATTCTGAACGGTCTTCTGACAGTGTTGTGACAACAACTAGATACGTGAGAGGCCAACCTTCTAGTCAAAGTTACCTTTTAAGGTTACAGGGGCTTCTCCGCCCTGTACGTACTGAAATTGCAGGGCCAGTTGGTGACACAGATAATGCTTTGCAAAATGCTGAGAACGGTGTTGCACCTGTTTTGACACAAAATGCACCAAACAGAGTCCAGGTCTCGTCGGTGGAATGCATGCCTGTCAGTCTTTCTTCTGCACAAAGGTAG 1143 0.4724 MAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTAVFVFRLLMFVDNGFAAGMGLDFGWQQRYARFCGRVVVLSILGLLLYPFLWAWTIIGTMWFSSAKSCLPEEGQKWGFLIWLLFSYCGLLCIACMSVGKWLTRRQAHLVRAQQGIPLSEYGILVDMIRVPDWAFEAAGQETRGMGQDTASYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPDSERSSDSVVTTTRYVRGQPSSQSYLLRLQGLLRPVRTEIAGPVGDTDNALQNAENGVAPVLTQNAPNRVQVSSVECMPVSLSSAQR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3820 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 362 IPR044793 GO:0004842|GO:0010182
Mtr4g3820 380 SMART ring_2 235 275 IPR001841 -
Mtr4g3820 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Mtr4g3820 380 SUPERFAMILY RING/U-box 217 284 - -
Mtr4g3820 380 Pfam Ring finger domain 234 276 IPR001841 -
Mtr4g3820 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 362 - -
Mtr4g3820 380 CDD RING-H2_RNF111_like 234 278 - -
Mtr4g3820 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3820 Mtr-Chr4 51933245 51937883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3820 58 362 C3H Transcription Factor Family AT3G47990 74.434 1.61e-163 458
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3820 4 51933245 51937883 Mtr4g3820 4 51933245 51937883 ECH