Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3808 ATGTTACCTTCAATTTCTGTTACACCTAATTCTGTCATGGTTTTCGACACAAATCTCAGAGAAAACTATCCCTCACAATCACAATCAATGCATTTGCAAGAAAACTACCTGAAACCAAGGCAGAAAGATGAGCTAAATCCATTTAGTGCTCACTCCTGTCATGGTAATTTCTTACAAGATTTTCAGCATATTGAGCAGTTTCATCATATGCATGGATCATCATCCTCCAATCAAGTTTTTGGGGACCAAACTCAAAACTTTGATCTATTTGGTAATGCAGAATGTGCAAATACAGATTTTGATGTTTATGATGGAAAGTCTTTTGCTGAGAATAATAGCGGTAGTGAGCATGCTCATAACCTTATTGACAATTTTCAATATGATGGTTATAGTTTGAATATCCCTAGAAGAAATCAACTTGATCTTATGGTTGAAAACCATAGTTATTTTTCCTTCAATAATCCTTCAGAAACCAAGTCATTGAGTTATGTTGTACCTGAGGATGAAGTTTCAAGCATAGCCCCGACAAATTATTACCAAAGAGCTGGATTGAATATAAACAACAGCTTGTTATCTCCTACGACAAGAAGAGCATTTAAAGCGAAGAAGAAAACAATCATAGTGAAGGGGCAATGGACAGTGGAAGAAGATAGATTGTTGAGTCAAATGGTGGAACAATATGGAATAAGGAAGTGGTCTCATATTGCTCTGAAGTTGCCTGGAAGAATAGGGAAACAATGCAGAGAAAGATGGCATAACCATTTAAGACCAGACATAAAGAAAGACGTATGGACAGATGAAGAGGATAAGATATTGATCCAAGCTCATACAGAGATAGGAAATAAGTGGGCGGAGATTGCGAAAAGATTGCCAGGAAGAACTGAGAATGCAATAAAAAACCATTGGAATGCAACAAAGAGAAGGCAATATTCCAAAAGAACATGTCGTTCGAAGTATCCAAGAGGGACTCTTTTGCAAGAATATATCAAGAGTCTGAATTTGGATCAAAACCCTCCAAGAGACTTTCGAAAAAGATCTTCTGCTAAAGCCAAGAAAAAGATTACTTGTAGCACAAGCAAAGCCGCAACACAGATTCCTCAGCCACATATTGCAAATCAATTTTTTCCTAATGACCGCTCGGTGCCAAACTATGAGTTCAATGATTTTTCTTTGGATGATAATTTGTTTGAAGAAGGGTGTGGTATTGATTCTCTGCTAGATGATATGTCAAGTGTTCCTACTATGGATGAAAAAGAATGTGATAAGGAAGGCATGCAAGTTGTTAATCTTGATGAGCATCAATTGGAGAAAGAGGTTGAAGTTAAGAAGGAGTTGGATTTGGTGGAGATGATCTCTCAGGCTAATCAAAATATTAATTGA 1380 0.3681 MLPSISVTPNSVMVFDTNLRENYPSQSQSMHLQENYLKPRQKDELNPFSAHSCHGNFLQDFQHIEQFHHMHGSSSSNQVFGDQTQNFDLFGNAECANTDFDVYDGKSFAENNSGSEHAHNLIDNFQYDGYSLNIPRRNQLDLMVENHSYFSFNNPSETKSLSYVVPEDEVSSIAPTNYYQRAGLNINNSLLSPTTRRAFKAKKKTIIVKGQWTVEEDRLLSQMVEQYGIRKWSHIALKLPGRIGKQCRERWHNHLRPDIKKDVWTDEEDKILIQAHTEIGNKWAEIAKRLPGRTENAIKNHWNATKRRQYSKRTCRSKYPRGTLLQEYIKSLNLDQNPPRDFRKRSSAKAKKKITCSTSKAATQIPQPHIANQFFPNDRSVPNYEFNDFSLDDNLFEEGCGIDSLLDDMSSVPTMDEKECDKEGMQVVNLDEHQLEKEVEVKKELDLVEMISQANQNIN* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3808 459 ProSiteProfiles Myb-like domain profile. 256 306 IPR001005 -
Mtr4g3808 459 PANTHER MYB PROTEIN-RELATED 149 407 - -
Mtr4g3808 459 CDD SANT 264 306 IPR001005 -
Mtr4g3808 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 204 259 IPR017930 -
Mtr4g3808 459 PANTHER BNAC03G62830D PROTEIN 149 407 - -
Mtr4g3808 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 260 310 IPR017930 -
Mtr4g3808 459 SMART sant 260 308 IPR001005 -
Mtr4g3808 459 SMART sant 208 257 IPR001005 -
Mtr4g3808 459 Gene3D - 263 324 - -
Mtr4g3808 459 Gene3D - 208 261 - -
Mtr4g3808 459 CDD SANT 212 255 IPR001005 -
Mtr4g3808 459 ProSiteProfiles Myb-like domain profile. 204 255 IPR001005 -
Mtr4g3808 459 SUPERFAMILY Homeodomain-like 208 302 IPR009057 -
Mtr4g3808 459 Pfam Myb-like DNA-binding domain 209 255 IPR001005 -
Mtr4g3808 459 Pfam Myb-like DNA-binding domain 262 303 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3808 Mtr-Chr4 51837801 51839691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3808 155 409 MYB Transcription Factor Family AT4G18770 54.307 1.47e-89 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g3808 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3808 K09422 - gmx:100816653 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3808 4 51837801 51839691 Mtr3g2454 3 38406109 38407797 ECH
Mtr4g3808 4 51837801 51839691 Mtr4g3808 4 51837801 51839691 ECH
Mtr4g3808 4 51837801 51839691 Mtr3g2454 3 38406109 38407797 PCT