Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3800 ATGAAAAATTTCCACATTTTATGTGGAATCGTAATATCCTCGTTGTTATCATATGTGACATGCTTTGACGGTGCAATACACGAAGCTGGTCTAACATGCGGGACTTATCAATACCCTCATGATGGTAACAATACTAACAATCACAAGTTGAAGCAAAACTTGATGGTTGTAATGGACGCGGTCTCATTTCAGGTGAAACAGCAGGGGTGGGGAGCACAAACATTAGTTGGTAATTGGCATCCAATGTATGCATTAGGCCAATGTCAACGCGATCTTGATCCGACACAATGCAACATTTGTTTCACCCAAGCAAGACAATTGTTATCGAGGTGCATACCAAAGGTTTCAGGTAGAATTTACCTCGACGGTTGTTTTCTTCGTTATGATAACTACACTTTCTTTGATGAGAGTGTAGATTTATCGCGTGATACGAAAATATGTGGGTCCACGGAAAAGGGAGAGACGGTGGATGCGAAACATGTTGAGACGGTGATTTTGAAAGTGACCAAGGGTGCCGGGGAACATAAATTTTCTGTGGATGGGGAAGGTGGTGCGTTTGCAATGGCGCAGTGTTGGGAGACGTTGGATAAATTGAGCTGTCAAAAATGTTTGATAGCAGCGGAGAAAAAAATGCAGGAATGTGTTCCTAGTAATGAGGGTAGAAGCTTATTTACTGGTTGTTTTATGAGGTATTCAACAAGGAAATTCTATAACAATGTCTATGTTCAAAATGATACATGGGTTGAAATTCCTCTTCCTCGAGGAAATGACAGTATTGGCGTGTCACCTAATTTTTCCTACGTAGCTGGTTTCAGTTTTAAGTATGATGTGCTTGAGAAGGGCACAAATTATTTTGATTCTGCAAATAAATTAGGCTTGCATGGTGAAGGAGAAGGTTCTGTGTTCAAAGGAACACTCCCCTCAGGAAGAATTGTTGTTGTTAAACGTTTGTTTTTTGATACAAGGCAATGGACAGATGTGTTATTCAGTGAAGTCAATTTGATTAATGGGATTCAACATAAGAATGTGGTCAAACTTTTGGGGTGTAGTATTGATGGCCCTGAAAGCTTGTTGGTTTATGAATTTCTTCCTAATAAAAGTCTAGATCAAATCCTTTCCGGTGTGGACTCAAAAAATGTTCTGACATGGGAGAAACGGTTTCAAATCATATGTGGGATAGCTGAGGGCTTAGCATATCTTCATGAGGGATCTGGAACAAAAATTATTCATAGAGACATAAAGTCCAGTAACATTCTACTTGATGAGTCTCTAAATCCAAAAATTGTTGATTTTGGTCTTGCTCTTTGTGTTGCTGAAAATAAATCTCATCTCAACAATGGAAATGCAGGAACACAGGGATATATGGCTCCAGAGTGTCTCAACAAAGGACAACTGACAGAGAAGGCAGATATATATGCTTTTGGTATTTTGGTTACTGAAATTGTTTGTGGGAAAAATAACGGTGTTTTTCCACAAGGTTCAAATTTGGTATGGAAGAATTACAAGGCAAACAATATCACAACATCAATTGATCCTGCTCTTCATGGAAAATTTGAGGTAGAAGAAGCATCAAATGCTCTACAAGCTGCACTTCTTTGTACACAATCATCTCCTACCCAAAGACCATCCATGTCAGAAGTAGTTCAAATGCTAACAAAAAAAGACTACAAAATTCCCACCCCAAAACAACAACCATTGCTCAACAACCATTTGAGGAATATGTCAAATGGTCTTGCAAGTACAAGATCATCTTTCCATAGCACCACTAGTTCCTTACCCTCAGGTGACGATACAAATCTACTAGATCATCCATTTTCTTCTTCTGCTAAGTTCAAAACTTCAGGGAGTCCTGATTCAGATATCCATGCAAACATTGTGTTGCCTCAACCAAAGTAG 1896 0.3903 MKNFHILCGIVISSLLSYVTCFDGAIHEAGLTCGTYQYPHDGNNTNNHKLKQNLMVVMDAVSFQVKQQGWGAQTLVGNWHPMYALGQCQRDLDPTQCNICFTQARQLLSRCIPKVSGRIYLDGCFLRYDNYTFFDESVDLSRDTKICGSTEKGETVDAKHVETVILKVTKGAGEHKFSVDGEGGAFAMAQCWETLDKLSCQKCLIAAEKKMQECVPSNEGRSLFTGCFMRYSTRKFYNNVYVQNDTWVEIPLPRGNDSIGVSPNFSYVAGFSFKYDVLEKGTNYFDSANKLGLHGEGEGSVFKGTLPSGRIVVVKRLFFDTRQWTDVLFSEVNLINGIQHKNVVKLLGCSIDGPESLLVYEFLPNKSLDQILSGVDSKNVLTWEKRFQIICGIAEGLAYLHEGSGTKIIHRDIKSSNILLDESLNPKIVDFGLALCVAENKSHLNNGNAGTQGYMAPECLNKGQLTEKADIYAFGILVTEIVCGKNNGVFPQGSNLVWKNYKANNITTSIDPALHGKFEVEEASNALQAALLCTQSSPTQRPSMSEVVQMLTKKDYKIPTPKQQPLLNNHLRNMSNGLASTRSSFHSTTSSLPSGDDTNLLDHPFSSSAKFKTSGSPDSDIHANIVLPQPK* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3800 631 Pfam Protein kinase domain 295 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3800 631 MobiDBLite consensus disorder prediction 577 631 - -
Mtr4g3800 631 Pfam Salt stress response/antifungal 177 233 IPR002902 -
Mtr4g3800 631 Pfam Salt stress response/antifungal 42 131 IPR002902 -
Mtr4g3800 631 SMART serkin_6 288 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3800 631 ProSiteProfiles Gnk2-homologous domain profile. 32 133 IPR002902 -
Mtr4g3800 631 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 254 630 - -
Mtr4g3800 631 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 254 - -
Mtr4g3800 631 ProSiteProfiles Protein kinase domain profile. 285 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3800 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 408 420 IPR008271 GO:0004672|GO:0006468
Mtr4g3800 631 MobiDBLite consensus disorder prediction 577 620 - -
Mtr4g3800 631 ProSiteProfiles Gnk2-homologous domain profile. 135 236 IPR002902 -
Mtr4g3800 631 Gene3D Phosphorylase Kinase; domain 1 266 362 - -
Mtr4g3800 631 SUPERFAMILY Protein kinase-like (PK-like) 272 585 IPR011009 -
Mtr4g3800 631 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 254 630 - -
Mtr4g3800 631 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 1 254 - -
Mtr4g3800 631 Gene3D - 158 236 IPR038408 -
Mtr4g3800 631 Gene3D - 32 133 IPR038408 -
Mtr4g3800 631 Gene3D Transferase(Phosphotransferase) domain 1 363 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3800 Mtr-Chr4 51787746 51790431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3800 53 577 Receptor kinase-like Gene Family AT1G70520 38.814 1.10e-131 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr4g3800 Pkinase 4.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3800 - - gmx:100780384 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3800 4 51787746 51790431 Mtr4g3800 4 51787746 51790431 ECH