Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3789 ATGCCTAAAAATCCATGGACCCTCTTCTTCTTATCCATTTTCCTTTTACTTCCATACCATTTTTTCCTCTCTATTGCTGTGAACACACAAGGGGAAGCTCTTCTTTCATGGAAGATAACCTTGAATGGTTCCTTGGAGATTTTGAGTAATTGGGACCCAATTGAAGACACACCATGTAGCTGGTTTGGAGTGAGTTGCAATATGAAGAATGAAGTAGTACAATTGGATCTAAGGTATGTGGATTTGCTTGGAAAACTCCCAACAAATTTCACATCATTGGTATCCTTGACTAGTCTTATCTTAACGGGAACGAATCTCACCGGTTCGATCCCTAAAGAAATAGGCAATCTTGTTGAACTCAGCTACTTGGACTTAAGTGACAATGCTTTGAGCGGCGAAATCCCAATTGAACTCTGCTACTTGCCCAAGCTCGAGGAACTTCATCTGAACTCAAACGAGCTTGTGGGATCAATACCAATTGCAATTGGTAACCTCACAAAATTAACAAAGCTGACCCTATATGACAATCAGCTCAGTGGCAAAATTCCAAACACAATCCGCAACATGAAGAATCTTCAAGTGATAAGAGCTGGAGGAAACAAGAATCTAGAAGGACCTATACCACAGGAAATTGGACACTGTTCCAATTTGATCATGTTGGGCTTAGCAGAAACAAGCATCTCAGGTTTCATTCCACCAACTATTGGACTACTAAAAAAGCTTGAAACATTAACCATTTACTCTTCACACCTCTCTGGTCAAATTCCACCTGAAATTGGTGACTGCACAAATCTTCAAAATATTTACCTTTATGAAAACTCACTCACAGGTTCCATTCCAACCAAATTAGGAAACCTTAAAAATCTCAAAAACCTGCTACTGTGGCAAAACAATTTAGTTGGCACTATTCCCTCAGAGATTGGAAACTGTTATCAATTATCAGTCATCGACGCATCGATGAATTCAATAACAGGAAGCATTCCCAAAACCTTTGGGAATTTAACTCTGTTACAAGAACTCCAATTAAGTGTGAATCAAATTTCTGGTGAAATTCCTGCAGAATTGGGGAACTGTCAACAACTAACACACGTGGAGATTGATAACAACCTTATAACCGGTACAATACCTTCCGAATTAGGAAACCTTGGGAATCTAACATTGTTGTTTTTGTGGCATAATAAGTTACAAGGTAATATACCTTCAACTCTTTCCAATTGTCAAAACCTTGAAGCTATTGATCTGTCACAGAATTTGTTAACTGGTCCCATACCAAAAGGTATATTTCAGCTTCAAAATCTCAACAAGCTTTTGCTTCTCTCTAATAATCTCTCTGGTAAAATTCCCTCTCAGATTGGGAATTGTTCTTCTCTTATTCGCTTCCGAGCGAATAATAACAACATTACTGGTTTTATTCCTTCTCAGATTGGTAATCTCAAGAATTTGAATTTCCTTGACCTAGGGAGTAATAGGATTGAAGGGATTATCCCGGAGAAAATCTCCGGTTGCCGGAATCTTACTTTCTTGGATTTGCATTCAAATTACATCGCCGGAGCCTTGCCGGATAGTTTGAGCGAGCTGGTTTCACTTCAATTTCTTGATTTCTCCGATAACATGATCGAAGGTGCATTGAATCCTTCTCTCGGCTCCCTTGCTGCTCTAACAAAACTTATTCTCCGGCAGAATCGAATCTCCGGTAAAATTCCGATGAAGCTTGGTTCATGTGAGAAGTTACAGTTACTTGATCTCAGCAGCAATCAACTCTCCGGTGAAATTCCTAGCACCATAGGAGACATTCCGGCACTGGAAATAGCTTTAAATCTGAGCACAAACCAACTTTCCGGCAAGATTCCTCACGAGTTTTCAAGCTTAACAAAACTCGGAGTTCTTGATTTATCTCACAACATTCTCACCGGAAACCTTGATTATCTTGCCGGATTGGAAAATCTCGTTGTTCTCAATATCTCATTCAACAAATTCTCAGGTCACGTTCCAAACACACCGTTCTTCGAGAAGCTTCCATTGAACGTTCTCTCAGGGAATCCTTCTCTTTGCTTCTCCGGCAACAATTGCACAGGCCAAGGTGGTGGAAAATCAGGTCGCCGAGCGAGGGAAGCGCGCGTGGTGATGATTGTTCTTCTTTGCGTTGCGTGTGTTTTACTCATGGCGGCGTTATACGTCGTCCTCGCAGCAAAACGACGTAGTGACCAAGAAAACGACGTGGAGCGGAAAGATAGCGACGGTGAAATGGTCCCACCTTGGGAAGTGACACTGTACCAGAAACTCGATCTGTCAATATCCGACGTGGCAAAATGTATCTCTGCTGGCAATATCGTCGGACACGGTCGATCAGGTGTCGTTTATAAAGTTACCATGCCAACAGGATTAACCATCGCGGTTAAAAAATTCCGGTCGTCGGAGAAATTCTCAGCATCGTCATTCTCATCGGAGATTGCGACGCTGGCTAGAATTCGACACCGGAATATTGTCCGGTTATTGGGTTGGGGTGCTAACAGGAGGACAAAGTTACTGTTTTATGATTATTTGCCGAACGGTAATTTGGATGCTATGTTACATGAGGGGTGTACAGGTTTAGCAGTGGAATGGGAAACACGGCTTAAGATAGCAATTGGTGTTGCTGAAGGGTTAGCTTATTTGCATCATGATTGTGTTCCTTCTATCTTGCACCGGGATGTTAAGGCGCAGAATATCTTGTTAGATGATAGATATGAAGCTTGTTTGGCTGATTTTGGGTTTGCTCGTTTCGTCGAAGAACAACCGCATGCTTCCTTTTCGGTTAATCCTCAGTTCGCCGGTTCTTACGGCTACATTGCTCCCGAGTATGCTTGTATGCTTAAAATAACAGAGAAGAGTGATGTATACAGCTTTGGTGTGGTCCTACTAGAGATAATTACAGGAAAAAGACCTGTGGATCCATCATTCCCGGATGGAATTCATGTTATTCAATGGGTTAGGGAGCATTTAAAGAGCAAGAAGGACCCAATTGAGGTTCTTGATTCAAAGCTTCAAGGTCATCCAGACACACAAATACAAGAGATGTTACAAGCACTTGGTATTTCATTATTGTGTACAAGTAATCGCGCTGACGATCGACCCACCATGAAGGATGTCGCTGCATTATTGAGAGAAATCAGGCATGACCCTACAACATCAGGTGCTGAGCCCTACAAGCCTAAAAGATCTGAAGCTTCGTCGTATTCTTCATCTTCGGTGACCCCGGCTCAGTTATTGCTTCTGCAATCAAATTCACATTCCTCATCAATTGCTTATTCTTCATCCTCAACCGCAGCAGTCTACCACTCACCAAGGAACCAATCATGA 3339 0.4193 MPKNPWTLFFLSIFLLLPYHFFLSIAVNTQGEALLSWKITLNGSLEILSNWDPIEDTPCSWFGVSCNMKNEVVQLDLRYVDLLGKLPTNFTSLVSLTSLILTGTNLTGSIPKEIGNLVELSYLDLSDNALSGEIPIELCYLPKLEELHLNSNELVGSIPIAIGNLTKLTKLTLYDNQLSGKIPNTIRNMKNLQVIRAGGNKNLEGPIPQEIGHCSNLIMLGLAETSISGFIPPTIGLLKKLETLTIYSSHLSGQIPPEIGDCTNLQNIYLYENSLTGSIPTKLGNLKNLKNLLLWQNNLVGTIPSEIGNCYQLSVIDASMNSITGSIPKTFGNLTLLQELQLSVNQISGEIPAELGNCQQLTHVEIDNNLITGTIPSELGNLGNLTLLFLWHNKLQGNIPSTLSNCQNLEAIDLSQNLLTGPIPKGIFQLQNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANNNNITGFIPSQIGNLKNLNFLDLGSNRIEGIIPEKISGCRNLTFLDLHSNYIAGALPDSLSELVSLQFLDFSDNMIEGALNPSLGSLAALTKLILRQNRISGKIPMKLGSCEKLQLLDLSSNQLSGEIPSTIGDIPALEIALNLSTNQLSGKIPHEFSSLTKLGVLDLSHNILTGNLDYLAGLENLVVLNISFNKFSGHVPNTPFFEKLPLNVLSGNPSLCFSGNNCTGQGGGKSGRRAREARVVMIVLLCVACVLLMAALYVVLAAKRRSDQENDVERKDSDGEMVPPWEVTLYQKLDLSISDVAKCISAGNIVGHGRSGVVYKVTMPTGLTIAVKKFRSSEKFSASSFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLDAMLHEGCTGLAVEWETRLKIAIGVAEGLAYLHHDCVPSILHRDVKAQNILLDDRYEACLADFGFARFVEEQPHASFSVNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKRPVDPSFPDGIHVIQWVREHLKSKKDPIEVLDSKLQGHPDTQIQEMLQALGISLLCTSNRADDRPTMKDVAALLREIRHDPTTSGAEPYKPKRSEASSYSSSSVTPAQLLLLQSNSHSSSIAYSSSSTAAVYHSPRNQS* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3789 1112 Gene3D Ribonuclease Inhibitor 604 678 IPR032675 -
Mtr4g3789 1112 ProSitePatterns Protein kinases ATP-binding region signature. 778 801 IPR017441 GO:0005524
Mtr4g3789 1112 Pfam Protein kinase domain 776 1043 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3789 1112 Pfam Leucine rich repeat 142 201 IPR001611 GO:0005515
Mtr4g3789 1112 Pfam Leucine rich repeat 463 515 IPR001611 GO:0005515
Mtr4g3789 1112 Gene3D Ribonuclease Inhibitor 282 362 IPR032675 -
Mtr4g3789 1112 Gene3D Ribonuclease Inhibitor 180 281 IPR032675 -
Mtr4g3789 1112 SUPERFAMILY RNI-like 200 515 - -
Mtr4g3789 1112 SMART serkin_6 772 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3789 1112 SUPERFAMILY L domain-like 52 256 - -
Mtr4g3789 1112 Gene3D Phosphorylase Kinase; domain 1 747 847 - -
Mtr4g3789 1112 SMART LRR_typ_2 478 502 IPR003591 -
Mtr4g3789 1112 SMART LRR_typ_2 334 358 IPR003591 -
Mtr4g3789 1112 SMART LRR_typ_2 238 262 IPR003591 -
Mtr4g3789 1112 SMART LRR_typ_2 526 550 IPR003591 -
Mtr4g3789 1112 SMART LRR_typ_2 93 117 IPR003591 -
Mtr4g3789 1112 SMART LRR_typ_2 141 165 IPR003591 -
Mtr4g3789 1112 SMART LRR_typ_2 382 406 IPR003591 -
Mtr4g3789 1112 SMART LRR_typ_2 286 310 IPR003591 -
Mtr4g3789 1112 SMART LRR_typ_2 646 679 IPR003591 -
Mtr4g3789 1112 MobiDBLite consensus disorder prediction 1049 1074 - -
Mtr4g3789 1112 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Mtr4g3789 1112 SUPERFAMILY Protein kinase-like (PK-like) 758 1047 IPR011009 -
Mtr4g3789 1112 Gene3D Transferase(Phosphotransferase) domain 1 848 1068 - -
Mtr4g3789 1112 ProSitePatterns Serine/Threonine protein kinases active-site signature. 893 905 IPR008271 GO:0004672|GO:0006468
Mtr4g3789 1112 Gene3D Ribonuclease Inhibitor 29 179 IPR032675 -
Mtr4g3789 1112 ProSiteProfiles Protein kinase domain profile. 772 1055 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g3789 1112 PANTHER OS01G0170300 PROTEIN 7 1068 - -
Mtr4g3789 1112 SUPERFAMILY L domain-like 436 684 - -
Mtr4g3789 1112 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 1068 - -
Mtr4g3789 1112 SMART LRR_sd22_2 406 435 - -
Mtr4g3789 1112 SMART LRR_sd22_2 165 194 - -
Mtr4g3789 1112 SMART LRR_sd22_2 623 648 - -
Mtr4g3789 1112 SMART LRR_sd22_2 478 504 - -
Mtr4g3789 1112 SMART LRR_sd22_2 117 149 - -
Mtr4g3789 1112 SMART LRR_sd22_2 526 552 - -
Mtr4g3789 1112 SMART LRR_sd22_2 262 288 - -
Mtr4g3789 1112 PRINTS Leucine-rich repeat signature 577 590 - -
Mtr4g3789 1112 PRINTS Leucine-rich repeat signature 623 636 - -
Mtr4g3789 1112 Gene3D Ribonuclease Inhibitor 363 603 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3789 Mtr-Chr4 51685733 51690359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3789 25 1101 Receptor kinase-like Gene Family AT5G56040 53.733 0.0 1125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr4g3789 Pkinase 2.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3789 - - gmx:100778064 1718.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3789 4 51685733 51690359 Mtr4g3789 4 51685733 51690359 ECH