Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3780 ATGGCATCATCATCCAGCTCATACAATTCACCTTGTGCTGCCTGCAAATTCTTGAGGAGAAAATGCATGCCAGGATGCATCTTTGCACCTTACTTCCCTCCAGAAGAGCCTCAAAAATTTGCAAACGTGCACAAAATATTTGGTGCTAGCAATGTCACAAAGCTTCTCAATGAACTTCTCCCTCACCAAAGGGAGGATGCTGTGAACTCCCTTGCTTATGAAGCCGAAGCACGAGTTAGGGATCCAGTTTATGGATGTGTAGGAGCCATCTCTTTTCTACAAAGACAAGTTCAAAGGCTTCAAAAGGAACTCGACGCTGCTAACACCGATCTTCTTCGCTATTCCCTCGCTGATATCTCTCCACCTCCTCCAGCATCTCTTTCTGTACCTCAAGGAATGATATCAGTTCAACCAATTCCACAAAGACAGTTCAGTGGAAGAAATGAAGGGTTTTATAGACAATCTCCTACTACTACTTATTCTTCTTTTCCTTATTCTCTTCCTTGGACTGATACTTCCTCGGTGGATATGAGTGAAGGTGGAGGAGGAGGAGGAAATCATATGTGA 567 0.4374 MASSSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANTDLLRYSLADISPPPPASLSVPQGMISVQPIPQRQFSGRNEGFYRQSPTTTYSSFPYSLPWTDTSSVDMSEGGGGGGNHM* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3780 188 Coils Coil 90 117 - -
Mtr4g3780 188 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 184 - -
Mtr4g3780 188 PANTHER ELONGATED PETIOLULE 1 3 184 - -
Mtr4g3780 188 Pfam Lateral organ boundaries (LOB) domain 11 107 IPR004883 -
Mtr4g3780 188 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3780 Mtr-Chr4 51551911 51554047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3780 1 171 AS2 family AT5G63090 68.889 1.71e-80 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr4g3780 LOB 2.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3780 - - gmx:100803667 292.737
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3780 4 51551911 51554047 Mtr3g2433 3 38164085 38166498 ECH
Mtr4g3780 4 51551911 51554047 Mtr4g3780 4 51551911 51554047 ECH
Mtr4g3780 4 51551911 51554047 Mtr3g2433 3 38164085 38166498 PCT