Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3778 ATGGGTCGTCATTCATGTTGTTTAAAGCAAAAGTTGAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAAAAGCTTTTCAATCATATAACTAGATTTGGTGTTGGTTGCTGGAGTTCTGTTCCTAAACAAGCTGGACTTCAAAGATGTGGAAAGAGTTGTAGATTGAGATGGATAAACTATTTGAGGCCTGATTTAAAGAGAGGAATGTTCTCACAACAAGAAGAGGATCTTATAATCAGTCTTCATGAAGTCCTTGGAAATAGGTGGGCTCAAATAGCAGCACAATTACCAGGGAGAACAGATAATGAAATTAAAAACTTCTGGAATTCGTGTTTAAAGAAGAAGCTTCTAAAGCAAGGGATTGATCCAACAACACACAAGCCTCTTACAGAAGCATATCTTAAGGAAGAGAACAAAATCACAGAAACAACAGTACCATCTATGCAAATACCATCAATTACATCACATGGTTCAGCATTTCTAATAACTGATTCGAGTTACTATGATGATAATGGCTTAACAGAAGCTTCAAGAGAAATTTTCACCAGCAAGCAAGCATTGGACCCTTTGTTCTGCTATGATTTCCAATCTGGTTATAACTTACCTATGAGTAATTATCACACAACTCTTAAACCATGTGATCAGAGTCAATTCGGACTTAATTCAAGCTATGGTTTCACTTCAATGCCGAGTCTAACAAATTCAGATCACGCGAATGTGTCCGTGACAGAGTTTTCAGACAACAATTCAGCTTCAAAAATCAATTCATTCTTCATGAATGATCAAGTGAAAGAAAGCAATTCAAGCAATAGCTCAAATATGAGTACTATTTATCCATCACAAATGAGAAGTACTATGATGGAAAATAACAATGCAGGGTTTTGTTGGGATGGATCAGAGAAAAATATAGACCCTTTGTTTCAGTTCCAAGTAAATGCTATAAAATCTGAAGATTATGGAACTAGTTCATGGGAAGAAGGACAACTTCAAACTCACAATTCAATAGAAGATTTCAATAGCTATCCATTAACATCACTTTCAGAAGATTTAACAGAAGCAAATTTTGATGTCTTCCATCATATATGA 1086 0.3554 MGRHSCCLKQKLRKGLWSPEEDEKLFNHITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLTEAYLKEENKITETTVPSMQIPSITSHGSAFLITDSSYYDDNGLTEASREIFTSKQALDPLFCYDFQSGYNLPMSNYHTTLKPCDQSQFGLNSSYGFTSMPSLTNSDHANVSVTEFSDNNSASKINSFFMNDQVKESNSSNSSNMSTIYPSQMRSTMMENNNAGFCWDGSEKNIDPLFQFQVNAIKSEDYGTSSWEEGQLQTHNSIEDFNSYPLTSLSEDLTEANFDVFHHI* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3778 361 PANTHER MYB DOMAIN PROTEIN 55 1 357 - -
Mtr4g3778 361 CDD SANT 70 109 IPR001005 -
Mtr4g3778 361 Gene3D - 11 67 - -
Mtr4g3778 361 CDD SANT 17 61 IPR001005 -
Mtr4g3778 361 PANTHER MYB TRANSCRIPTION FACTOR 1 357 - -
Mtr4g3778 361 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr4g3778 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr4g3778 361 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Mtr4g3778 361 SMART sant 66 114 IPR001005 -
Mtr4g3778 361 SMART sant 13 63 IPR001005 -
Mtr4g3778 361 Gene3D - 69 142 - -
Mtr4g3778 361 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mtr4g3778 361 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mtr4g3778 361 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr4g3778 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3778 Mtr-Chr4 51529278 51531324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3778 1 131 MYB Transcription Factor Family AT4G01680 85.496 1.52e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g3778 Myb_DNA-binding 8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3778 K09422 - gmx:100811140 552.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3778 4 51529278 51531324 Mtr4g3778 4 51529278 51531324 ECH
Mtr4g3778 4 51529278 51531324 Mtr3g2429 3 38115871 38117464 PCT