Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3776 ATGAACCCCTACGACAATAGGTACTCCGATTCCACTTCTTTTCGCGGCCGTCGCAGTGATCTCGTTGGACCTATGCCGCCGCAGAATTTCGGCCGCGGCGGCCCTGCTCCGTACGGTGCTGCTCCATATGCATCTCATGCACCGACTGGTTTTGGATCCGCTCCGGTTACCCCGATTCCTCACTTTTTACCACCTCCTGGAGGAGGTGGATTTAGCATAGGTCGCGGCGGCGGTGGTGGTTTTGGCCCTAGATTCGGCAACGGTCACGCAAGTGATAGAAAGTATGATTCGGGGCGTGGTGGGAGAGGCGGTGGTAGGGGTGGAGCTCAAGGTTTTAGTGGTGGGAGAGGTCGTGGAGGTGGTGGTGGTAGAGGAGGGAGTGGAGGAAGAGGTGGTGGATTTGGAGGTAGACATGGATCTTCTAAGGATGATTTGAACAACATTACACTTCCAAAGCAAGATTTTAGAAATTTGGTTCCTTTTCAGAAAAATTTCTATGTTGAAAGTCCTATGATACAAGCCATGTCTGATCAGCAAGTCATGCAGTACCGTGCTAGTAGAGATATTACAGTTGAAGGGCATGATGTGCCAAAACCAATTCGCGCTTTTCATGAGGCGAATTTTCCTGATTACTGCCTTGACGTTATTGCCAAGTTGGGTTTTGTTGAGCCTACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTTACGGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGTCGTATCTACTTCCTGCTATAGTTCATGTCAGTGCACAACCTCGATTAGTACAAGGGGAAGGTCCTGTTGTCCTGGTTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAACAAGAAGCTATGAAATTTGGGTCACGATCAAATATTAGATGTACATGCATATATGGTGGTGCTCCAAAGGGCCCTCAAATTCGTGACCTTAGAATGGGTGTTGAGATTGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTGCAGAGAGTGACGTACCTTGTCTTGGATGAAGCTGATCGAATGTTGGACATGGGTTTTGAACCTCAGATTCGGAAGATTGTAAACCAGATTCGACCAGATAGGCAGACATTATACTGGAGTGCAACATGGCCAAAGGAGGTTGAATCTCTGGCAAGGCAGTTTCTGCACAACCCATATAAGGTAGTTATTGGGTCACCATATCTGAAAGCGAATCAATCTATAAATCAAGTTGTTGAAGTTGTCACCGACATGGAGAAATATAACAGACTGATCAAGCTGCTGAAAGAAGTGATGGATGGGAGCCGAATTCTAATATTTACAGAAACAAAAAAGGGATGTGACCAAGTTACTAGACAATTGAGAATGGATGGATGGCCAGCATTATCCATCCATGGTGATAAGAACCAGGCTGAAAGGGATTGGGTTTTGGCCGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATAAAATGTGTGGTCAATTATGATTTTCCTTCAAGCCTCGAAGATTATGTCCATAGAATTGGTCGAACTGGCCGTGCAGGAGCTAAAGGAACTGCATATAGTTTTTTTACCAGTGCTAATGCGAAGTATGCTAGGGATTTGATTAAGATCTTACAAGATGCTGGTCAGATTGTTAGTCCTGCATTGTCTGCATTGACTCGGTCTGGTGGTTTTGGTCAACATGCATCAAGGGGAGGCTTTCGCTCAAGAGGACGAGGAGGCTATGGCAATCGGGGTTCAACATCAGGATCCAATGCCATTCCTGTAGGCGGGAAGAGGCCATGGCAGTCTAGGTAG 1878 0.4643 MNPYDNRYSDSTSFRGRRSDLVGPMPPQNFGRGGPAPYGAAPYASHAPTGFGSAPVTPIPHFLPPPGGGGFSIGRGGGGGFGPRFGNGHASDRKYDSGRGGRGGGRGGAQGFSGGRGRGGGGGRGGSGGRGGGFGGRHGSSKDDLNNITLPKQDFRNLVPFQKNFYVESPMIQAMSDQQVMQYRASRDITVEGHDVPKPIRAFHEANFPDYCLDVIAKLGFVEPTPIQAQGWPMALTGRDLIGIAETGSGKTLSYLLPAIVHVSAQPRLVQGEGPVVLVLAPTRELAVQIQQEAMKFGSRSNIRCTCIYGGAPKGPQIRDLRMGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVNQIRPDRQTLYWSATWPKEVESLARQFLHNPYKVVIGSPYLKANQSINQVVEVVTDMEKYNRLIKLLKEVMDGSRILIFTETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPSSLEDYVHRIGRTGRAGAKGTAYSFFTSANAKYARDLIKILQDAGQIVSPALSALTRSGGFGQHASRGGFRSRGRGGYGNRGSTSGSNAIPVGGKRPWQSR* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3776 625 CDD DEADc_DDX5_DDX17 213 408 - -
Mtr4g3776 625 Gene3D - 412 582 IPR027417 -
Mtr4g3776 625 CDD SF2_C_DEAD 420 550 - -
Mtr4g3776 625 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 79 610 - -
Mtr4g3776 625 MobiDBLite consensus disorder prediction 584 625 - -
Mtr4g3776 625 MobiDBLite consensus disorder prediction 1 37 - -
Mtr4g3776 625 Gene3D - 164 411 IPR027417 -
Mtr4g3776 625 SMART helicmild6 460 541 IPR001650 -
Mtr4g3776 625 MobiDBLite consensus disorder prediction 55 147 - -
Mtr4g3776 625 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 232 407 IPR014001 -
Mtr4g3776 625 Pfam DEAD/DEAH box helicase 225 395 IPR011545 GO:0003676|GO:0005524
Mtr4g3776 625 SMART ultradead3 220 423 IPR014001 -
Mtr4g3776 625 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 435 580 IPR001650 -
Mtr4g3776 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 561 IPR027417 -
Mtr4g3776 625 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 353 361 IPR000629 -
Mtr4g3776 625 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 201 229 IPR014014 GO:0003724
Mtr4g3776 625 PANTHER LD32873P 79 610 - -
Mtr4g3776 625 Pfam Helicase conserved C-terminal domain 431 541 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3776 Mtr-Chr4 51513626 51518465 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3776 189 561 Eukaryotic Initiation Factors Gene Family AT3G19760 35.561 1.96e-69 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3776 K12823 - gmx:100817092 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3776 4 51513626 51518465 Mtr4g3776 4 51513626 51518465 ECH