Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3744 ATGTCTATCACTTCCTTCAAATCTCTCACAATGGCAGAATCATGCTTACTTTCTCAACCTTCACTCTTCTACACCAAATCCAAATCCCCATTCATCTCTAATTCCGCCAAACCCTTCAAGGTTCAAAACCCATCTTACAATTCTTCAAAGTTTTCATCATCTGTCTCACTCGTTTCCAAGAGAAGAACCCGTCATTCTTCTTTGGTTACATTTGTTGCACAAACTTCTGATTGGGCTCAACAGGAAGAGAAGGAAGATGGTGCTACATGGGAGAATCAAGCGGATGCTACATGGGTTGGTGAAACTGAAAGTAACGAGAATGAAGAAGTTGAAGTTGCCAGTTTTGAAGAACCTTCTGAAGATTTGAAGATTTTTGTTGGGAATTTGCCTTTTGATGTTGATAGTGAGAAATTGGCTCAGCTTTTTGAGCAATCTGGGACTGTTGAGATTGCCGAGGTAATTTATAATAGGGACACTGACAGAAGTCGTGGGTTCGGATTTGTCACAATGAGTACATCGGAAGAAGTTGAGAGAGCTGTGAACAAATTCAGTGGCTTTGAATTAGATGGAAGATTGTTGACAGTTAATAAGGCTGCTCCAAGAGGAACACCACGGCTGCGCCAACCACGTACCTTTAATTCCGGTTTAAGAGCCTATGTTGGTAACTTGCCATGGGACGTTGACAATTCTAGCTTGGAGCAACTTTTCAGCGAACATGGTAAGGTTGAGAGTGCTCAGGTAGTCTATGACAGAGAGACCGGTCGATCACGTGGTTTTGGCTTTGTTACAATGAGCAATGAGGCTGAGATGAATGATGCCATTGCTGCTCTTGACGGTCAGAGCTTCAATGGGAGGGCAATTAGAGTGAATGTTGCTGAGGAAAGGCCCAGGCGCTCTTTCTGA 903 0.433 MSITSFKSLTMAESCLLSQPSLFYTKSKSPFISNSAKPFKVQNPSYNSSKFSSSVSLVSKRRTRHSSLVTFVAQTSDWAQQEEKEDGATWENQADATWVGETESNENEEVEVASFEEPSEDLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKFSGFELDGRLLTVNKAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVAEERPRRSF* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3744 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 216 294 IPR000504 GO:0003723
Mtr4g3744 300 CDD RRM_HP0827_like 123 200 - -
Mtr4g3744 300 SUPERFAMILY RNA-binding domain, RBD 214 298 IPR035979 GO:0003676
Mtr4g3744 300 Gene3D - 60 205 IPR012677 -
Mtr4g3744 300 Gene3D - 206 299 IPR012677 -
Mtr4g3744 300 CDD RRM_HP0827_like 217 293 - -
Mtr4g3744 300 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 122 200 IPR000504 GO:0003723
Mtr4g3744 300 PANTHER RIBONUCLEOPROTEIN 2 93 - -
Mtr4g3744 300 PANTHER RIBONUCLEOPROTEIN 110 299 - -
Mtr4g3744 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 124 193 IPR000504 GO:0003723
Mtr4g3744 300 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 219 288 IPR000504 GO:0003723
Mtr4g3744 300 PANTHER OS02G0815200 PROTEIN 2 93 - -
Mtr4g3744 300 PANTHER OS02G0815200 PROTEIN 110 299 - -
Mtr4g3744 300 SMART rrm1_1 217 290 IPR000504 GO:0003723
Mtr4g3744 300 SMART rrm1_1 123 196 IPR000504 GO:0003723
Mtr4g3744 300 SUPERFAMILY RNA-binding domain, RBD 118 214 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3744 Mtr-Chr4 51191336 51193939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3744 105 298 Eukaryotic Initiation Factors Gene Family AT3G16380 33.333 5.46e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3744 - - gmx:100811487 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3744 4 51191336 51193939 Mtr3g2402 3 37869283 37871756 ECH
Mtr4g3744 4 51191336 51193939 Mtr4g3744 4 51191336 51193939 ECH
Mtr4g3744 4 51191336 51193939 Mtr3g2402 3 37869283 37871756 PCT