Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3741 ATGAAGAATGACTTCACTAATACTATCACAACCTTCCTTCACCTTCAACAAAAACAAAACCCTATTTCCATTCTCAACTACCAATATCTCACTTCCATCAAAACCCTAACGCCTCATATCACATGTCTTGCAGTCCACCGTAACCTTCTATACGCTGCATCTCTCAACCTCATCAACGTCTTTGATCTCTCCTCTCATCATACTCTCATTGACACCTTCAACGAAACCTCCACTTCAGGTTTTGTCAAGTCCATCACCTTCAGTGGTTCAAGAGTCTTCACTGCCCACCAAGACTGCAAAGTTCGTGTCTGGCTTATCACATCTTCAAAAACACACCGTCTTCTCTCCTCACTTCCCACCGTTAAAGACCGGTTGCGACGCTGCATAGTGCCAAAAAACTACGTCAGTGTTCGACGTCACCGGAAGAGCCTTTGGATCCAACATAATGATACAGTTTCTGGTTTAGCAGTAAACAAGAAAGAGAAACTCATGTACTCAGTTTCATGGGATAAAACTTTCAAGATTTGGGACTTGTCTTCAGGTAATAACTGGTGTTTGGAGTCTTTTAACGCTCATGAAGACGCTATTAACGCTGTTGTTGTTTCTGATGACGGTGTTGTTTATACTGCATCAGCTGATGGGTGCATCAAGGTTTGGAAGATGATGGATGATCAGGTGAAACGCTACACGTTGGTGAGTATGGTGGGGAAGCAGAAACCAGCCGTTAATGCGTTGGCATTGAACAGTGATGGAACGGTGTTGTTTTCAGGTGGGAGTGACGGGACGATTTGTCAGTGGCAGGATAAACAAAACGACATCGTGTTGAAGGAAAAGTTGAGGGGTCATAGTGGGGCAATACTTTGTTTAGTCAACGTTGATGATTTGTTGGCGAGTGGGTCAGCTGATCTAACGGTGAGGATTTGGCAGAGGGAGAAGGGAGGTAGTAGCTATTGTTGTAGAGGAGTGTTGGAAGGACATGAAAAACCGGTAAAGTCGTTGGTGGCAATTTCCGGTGGAGGTGAAGATGATGATGAGGTTGTTACGTTGTTTAGTGGAAGTCTTGATGGTGATATTAGAGTTTGGGAAGTGTTTGGTTTGGTTTAA 1104 0.4393 MKNDFTNTITTFLHLQQKQNPISILNYQYLTSIKTLTPHITCLAVHRNLLYAASLNLINVFDLSSHHTLIDTFNETSTSGFVKSITFSGSRVFTAHQDCKVRVWLITSSKTHRLLSSLPTVKDRLRRCIVPKNYVSVRRHRKSLWIQHNDTVSGLAVNKKEKLMYSVSWDKTFKIWDLSSGNNWCLESFNAHEDAINAVVVSDDGVVYTASADGCIKVWKMMDDQVKRYTLVSMVGKQKPAVNALALNSDGTVLFSGGSDGTICQWQDKQNDIVLKEKLRGHSGAILCLVNVDDLLASGSADLTVRIWQREKGGSSYCCRGVLEGHEKPVKSLVAISGGGEDDDEVVTLFSGSLDGDIRVWEVFGLV* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3741 367 Gene3D - 17 130 IPR015943 GO:0005515
Mtr4g3741 367 ProSitePatterns Trp-Asp (WD) repeats signature. 349 363 IPR019775 -
Mtr4g3741 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 189 229 IPR001680 GO:0005515
Mtr4g3741 367 Pfam WD domain, G-beta repeat 278 308 IPR001680 GO:0005515
Mtr4g3741 367 Pfam WD domain, G-beta repeat 147 177 IPR001680 GO:0005515
Mtr4g3741 367 Pfam WD domain, G-beta repeat 184 220 IPR001680 GO:0005515
Mtr4g3741 367 Pfam WD domain, G-beta repeat 319 361 IPR001680 GO:0005515
Mtr4g3741 367 Pfam WD domain, G-beta repeat 239 266 IPR001680 GO:0005515
Mtr4g3741 367 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 28 363 IPR045182 -
Mtr4g3741 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Mtr4g3741 367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 309 - -
Mtr4g3741 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 309 IPR001680 GO:0005515
Mtr4g3741 367 SMART WD40_4 316 362 IPR001680 GO:0005515
Mtr4g3741 367 SMART WD40_4 26 62 IPR001680 GO:0005515
Mtr4g3741 367 SMART WD40_4 139 177 IPR001680 GO:0005515
Mtr4g3741 367 SMART WD40_4 66 105 IPR001680 GO:0005515
Mtr4g3741 367 SMART WD40_4 272 309 IPR001680 GO:0005515
Mtr4g3741 367 SMART WD40_4 228 267 IPR001680 GO:0005515
Mtr4g3741 367 SMART WD40_4 182 220 IPR001680 GO:0005515
Mtr4g3741 367 PRINTS G protein beta WD-40 repeat signature 164 178 IPR020472 -
Mtr4g3741 367 PRINTS G protein beta WD-40 repeat signature 296 310 IPR020472 -
Mtr4g3741 367 PRINTS G protein beta WD-40 repeat signature 349 363 IPR020472 -
Mtr4g3741 367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 145 182 - -
Mtr4g3741 367 Gene3D - 133 229 IPR015943 GO:0005515
Mtr4g3741 367 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 28 363 - -
Mtr4g3741 367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 189 221 - -
Mtr4g3741 367 ProSiteProfiles Trp-Asp (WD) repeats profile. 145 182 IPR001680 GO:0005515
Mtr4g3741 367 SUPERFAMILY WD40 repeat-like 25 364 IPR036322 GO:0005515
Mtr4g3741 367 Gene3D - 230 366 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3741 Mtr-Chr4 51175509 51177164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3741 94 308 Eukaryotic Initiation Factors Gene Family AT2G46290 25.217 3.63e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3741 - - mtr:MTR_4g104410 744.962
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3741 4 51175509 51177164 Mtr4g3741 4 51175509 51177164 ECH