Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3735 ATGACAACTACAACTACTTCCTCCCTCTTCTTCCTTCTCTCTCTCCTCACTTTTTCTCTCATTTCCTCTTCACCCCTTCAAGACCCTGATTTGGTTACACAAGAAGTTAACAGGAAAATCAATGGCTCATTAGCTAGGAGAAATTTGGGGTACCTCTCATGTGGAAGTGGAAACCCAATTGATGATTGTTGGAGATGTGACCCAAACTGGGAAAAAAACAGACAAAGGCTAGCAGATTGTGCAATTGGGTTCGGTAAGAATGCCATTGGTGGTAAAAATGGTAAAATCTACGTCGTAACAGATTCCGGTGACGACGATCCAGTGACTCCAAAACCCGGTACACTTCGTTTCGCTGTGATTCAAGATGAACCATTATGGATAATCTTTGCAAGAGACATGGTGATTCAGCTAAAAGAAGAGCTTATAATGAATTCATTCAAGACCATTGATGGAAGAGGAGCTAGTGTTCACATTGCTGGTGGTCCATGTATTACAATTCAGTATGTGACTAATGTTATAATACATGGTATACATATACATGATTGTAAACAAGGTGGGAATGCTATGGTGAGGGATTCTCCAGGACATTATGGGTGGAGAACAGTATCAGACGGTGATGGTGTTTCAATCTTTGGTGGTAGTCATGTTTGGGTGGATCATTGTTCTTTGTCTAACTGTAATGATGGTTTGATTGATGCTATTCATGGGTCCACTGCAATTACCATCTCTAACAATTATATGACTCACCATGATAAAGTTATGCTTTTGGGTCATAGTGATACTTATACTCAAGACAAGAACATGCAAGTTACTATTGCTTTTAATCACTTTGGTGAAGGCCTTGTTCAAAGAATGCCAAGGTGTAGGCATGGTTATTTTCATGTGGTAAACAATGACTATACTCACTGGGAAATGTATGCTATTGGGGGAAGTGCTAACCCTACCATCAATAGCCAAGGAAACAGATTTGTAGCCCCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAAGGTGAATGGAAAGGATGGAATTGGAGATCAGAAGGGGATTTATTGATAAATGGTGCATTTTTTACACCATCAGGAGCAGGAGGAGCATCATCAAGCTATGCAAGAGCATCAAGTTTAAGTGCAAGACCATCTTCTCTAGTTGGTACAATAACGACTGGTGCTGGTGTACTTGGTTGTAAGAAAGGTTCTCGTTGCTGA 1224 0.4085 MTTTTTSSLFFLLSLLTFSLISSSPLQDPDLVTQEVNRKINGSLARRNLGYLSCGSGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSGDDDPVTPKPGTLRFAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGIHIHDCKQGGNAMVRDSPGHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDDRFSKEVTKHEDAPEGEWKGWNWRSEGDLLINGAFFTPSGAGGASSSYARASSLSARPSSLVGTITTGAGVLGCKKGSRC* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3735 407 PANTHER PECTATE LYASE 18-RELATED 9 404 IPR045032 GO:0030570
Mtr4g3735 407 Gene3D - 57 400 IPR012334 -
Mtr4g3735 407 Pfam Pectate lyase 141 323 IPR002022 -
Mtr4g3735 407 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Mtr4g3735 407 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Mtr4g3735 407 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Mtr4g3735 407 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Mtr4g3735 407 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Mtr4g3735 407 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Mtr4g3735 407 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Mtr4g3735 407 PRINTS Pollen allergen Amb family signature 378 401 IPR018082 -
Mtr4g3735 407 SUPERFAMILY Pectin lyase-like 35 401 IPR011050 -
Mtr4g3735 407 PANTHER PECTATE LYASE 9 404 - -
Mtr4g3735 407 SMART amb_all 132 329 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3735 Mtr-Chr4 51084807 51087077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3735 8 407 Polysaccharide Lyase AT5G63180 82.045 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3735 K01728 - gmx:100101868 742.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3735 4 51084807 51087077 Mtr3g2391 3 37777507 37780146 ECH
Mtr1g4246 1 54109856 54116447 Mtr4g3735 4 51084807 51087077 ECH
Mtr4g3735 4 51084807 51087077 Mtr4g3735 4 51084807 51087077 ECH
Mtr4g3735 4 51084807 51087077 Mtr3g2391 3 37777507 37780146 PCT