Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3734 ATGGATGGTAGGAGGCATTCTGTTGATGTGCCTATTTCTAAAACTCTTGTAGCATTGAGGAGAGTTAGGTCATTGAGGGATCCTTCAACAAATGGTATTAGTAAGCTCTCACCTTTGATTGATAATGAACATTGGGAAAATGGGATTTCTCTGAGGTTTGTTAATGCTACTTATGTATGTGAATCTGATGATAATGGCTGTTTAAGGTCAAAGGATTTAGATTTTAAGGGTCGTAGAGAGCATGACATTGATAGTACTACTAACTTTGAAATGGGTTGTCACATGATGAACTATTGTGATAAACAGCAACAAGATGATGAATTAGTTTACTCTAATCCTAAGCAGCAAGGTGATTTTGGAAATAAATCGCCGAAAGAAAGTTGTTGTAGCAACCATGAAGCCGTAGGATTGGATTTAGCTTCAATCATTCCGTCTAGTAATCATTTGAAGGATAAAGAATCATGTTATTTATCAAGTCAATTGTCGTCGCGATTAGGGAGAATAGATTACAAAAAGTCAACTAGAAAACTGCTGCAAAAGAATCAAGCGAAACCGTTTGAGTTGATGCAGGATAATGCAAGCAGTGTTGATAGTCCATGCCTTAGTGCCTCAACACAAACACCTCAAGATGTTGATGTTTTAGTTGATTACAATGGATGTGGAATAAGCTGTTGTTGGTCGAAGTCACCGAGGTTTAGAGATGCAAATTATTATTCTGAAATGGAAGACCTTCCCTTGATGTTGCAGCATGTTAATGAGACTGATCTTCATGGACAGAAAAGCATGAGACACATTATTGGTAGTGAAATTAGTCCTACATTAGAAACTCCTAGAAGTTTATCTATGAAATTTAGGCCGAAATCTTTCAATGATTTGGTTGGACAAAATATGGTTGGTAAGTCTCTTTCGGGTGCAATCTCTAGAGGAAGGATAGCATCATTCTATCTATTTCATGGTCCTCGTGGAACGGGAAAAACATCTGCATCGAGGATATTTGCTGCTGCACTGAATTGCATCTCGCTCGAGGAGCGAAGGCCTTGTGGTTTGTGTAGTGAATGTGTTTTGTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTCGACTCTTTGAGGATAAATCGTCCGGACAAGGCTAAATCCCTTGTTAAGAATGCTTGCACAACAGCTCCTTTTTCATCACGTTATAAGGTGTTCATTATTGATGAGTGCCAGTTATTGAATAAGGAAACATGGGCTACTCTTCTGAATAGCCTAGGGGTTTTTTCTCAACATGTGGTCTTTGTGATGATCACTCCTGATTTGGAGAAGCTACCAAGAAGTGCGATTTCTCGAGCTCAAAGGTATCACTTTACAAAGATTAAAGATGCTGACATTGCTAGCAGACTCAAAAGAATTTGCGTTGAAGAAGGTCTTGAGTCCGAACAAGATGCTTTGGATTTCATTGCTGCTAAATCATGTGGTTCTCTTAGGGACGCAGAAATGATGCTTGATCAGCTAAGTTTGCTTGGTAAAAAAATCACAATTTCCTTAGTCTACGAACTTACTGGGGTCATTTCTGATGATGAATTGCTTGATTTGCTGGACCTGTCTTTGTCATCCGACACTTCAAATACGGTTATAAGAGCCCGGGAGCTGTTGAGATCAAGGATAGATCCTTTACAACTTATATCTCAGCTAGCGAATCTTATTATGGACATTCTTGCAGGGAAGTGTGAACTTACTGGTTCTGAAATCAGAAGAAGATTTTCTGATAGACATATTTCGGAATCAAGCATGCAGAAACTTAGTCATGCATTAAGAATACTTTCTGAAACGGAGAAGCAATTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTAAGCTCTTTAGAATATTCATCTGTGGATGCTAATGATTCCAAGTTGTGCATCAGAGCTGCATCCAATAGAGATGGCGATTTATGCAGTACATCATCTACAGCTGAAAGCTTAAAGCATCTTGCTACAGGTAAGTGCGCTGAGAAGTCATATAAAATAGAAGTGCAGGATGATGATAAAGCCACATTGGATTGTATATGGTATAAAGCTACAGAGATATGTGAATCTAAAAGGCTCAAGGCTTTTCTCAGGAAGCAAGGGAAGTTGTCTTCAGTTTGTATTAATCAAGGTCTTGCAGCTGTGGAGTTGGAATTCCACCACCGTGTCTATGTAGCTAGAGCTGAAAAGTCATGGAAACAAATTGCAAGTTCCCTACAGTTCATATTGGGTTGCAACATTGAGCTCAGAATCAACCATGTTCCATGTACTACAGATTCTAAGTATGCTAGGTTGAAGAGGTCATCTTTCAATTTCTTCAATTGTTCGCGCAGGATTCTTCGGAAATCATTATCATCCGATGAACAAGGATGTGAATCAGACTATGCTGATTGCACTTCTCAAAAGCCTATGATGATGGACCGAACTCTATCTCGCTCCTCTGATTGCGGATCCCGGGTACCTCCCCTTGAGTCCTACCATGGAATGGAGCTTGTAACAACTCTTAGAAGCTGTGAAGGGAATTTACTAAGCTCAGGGAAAATAATTTTGAATAGAATAGATCAAGAGACTCCAAGGATTTCATTTTCTAGAGATGATTCTGTCAAGGAAGAAGAGTGCAATTATGAAGATCTTGCATCATCAACCGCTGATTTAGAAAATACTCATTCTAACTGTTTTCCTCGAACGCTCTGGCTTCATAAAAAACTATCTTCTTCATATGCATCAAAACAGAAGGAATTTTGTTTTATCCATCCCCAAGTTCAAATGTATTGA 2808 0.3885 MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLIDNEHWENGISLRFVNATYVCESDDNGCLRSKDLDFKGRREHDIDSTTNFEMGCHMMNYCDKQQQDDELVYSNPKQQGDFGNKSPKESCCSNHEAVGLDLASIIPSSNHLKDKESCYLSSQLSSRLGRIDYKKSTRKLLQKNQAKPFELMQDNASSVDSPCLSASTQTPQDVDVLVDYNGCGISCCWSKSPRFRDANYYSEMEDLPLMLQHVNETDLHGQKSMRHIIGSEISPTLETPRSLSMKFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKTSASRIFAAALNCISLEERRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKNACTTAPFSSRYKVFIIDECQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRAQRYHFTKIKDADIASRLKRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKKITISLVYELTGVISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMDILAGKCELTGSEIRRRFSDRHISESSMQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSLEYSSVDANDSKLCIRAASNRDGDLCSTSSTAESLKHLATGKCAEKSYKIEVQDDDKATLDCIWYKATEICESKRLKAFLRKQGKLSSVCINQGLAAVELEFHHRVYVARAEKSWKQIASSLQFILGCNIELRINHVPCTTDSKYARLKRSSFNFFNCSRRILRKSLSSDEQGCESDYADCTSQKPMMMDRTLSRSSDCGSRVPPLESYHGMELVTTLRSCEGNLLSSGKIILNRIDQETPRISFSRDDSVKEEECNYEDLASSTADLENTHSNCFPRTLWLHKKLSSSYASKQKEFCFIHPQVQMY* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3734 935 CDD AAA 293 444 - -
Mtr4g3734 935 CDD HLD_clamp_pol_III_gamma_tau 453 516 IPR045085 -
Mtr4g3734 935 Gene3D - 273 451 IPR027417 -
Mtr4g3734 935 Gene3D - 454 515 - -
Mtr4g3734 935 SMART AAA_5 311 455 IPR003593 -
Mtr4g3734 935 Pfam DNA polymerase III, delta subunit 295 453 - -
Mtr4g3734 935 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 115 899 - -
Mtr4g3734 935 Coils Coil 879 899 - -
Mtr4g3734 935 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 279 626 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Mtr4g3734 935 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 115 899 - -
Mtr4g3734 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 283 512 IPR027417 -
Mtr4g3734 935 SUPERFAMILY post-AAA+ oligomerization domain-like 523 624 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3734 Mtr-Chr4 51063231 51068716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3734 270 565 Core DNA Replication Machinery Family AT1G21690 21.812 1.12e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3734 - - pvu:PHAVU_003G207500g 1223.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3734 4 51063231 51068716 Mtr4g3734 4 51063231 51068716 ECH
Mtr4g3734 4 51063231 51068716 Mtr3g2388 3 37747252 37752280 PCT