Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3732 ATGGAACACTCTGAAGAAATCGATTTAGCTGCTACTGTTTCCAACGCCGAAGAACCCCAACTGGGTTCTGAGGTTCAACAATCTTCACCAGTTGATCATCATTCTCCACCGTCAGATCTCAATCAAACGGTTCAAAAGAATGATGATGAACTTGCTGTGGAGCTTCATGAGAAGTTGGATTTGAAGGTTGAAGATGAAGGGGTTGTTGAAACTGATGATAAAGTTTCGAACTTTAACGATGGTGGAGTAGTTTCTGATGAAAGGGGCTCTGAAACTGAGGATAAAGTTTTGAACTTTGATGATGATGAACGAGTTGGTGATGAAAGGGGTGCTGAAATTGAGGATAAAGTTTCAAACTTTGATGATGGTGAACGAGTTGGTGACGAAGAATCTCTGAAAGGTGAAAAGGTCGATGAAGAAGAATCTGTGAAGGGTGAAAATGAAGAATTTGTTGAGGGTGAAGAAAGGGTTGATGTTGATGGAGATAGCAAAGGTTGGGATACTAATAGTTGGAATGAGAATGTGAATGAAGAACTTGGTGGTGGTAGAGATGCTGATGATTGGGGTTATGGTGTCGGTAATGGTGGTGGTGCTGGTTATGGTTATGGTGCTGGATATGGGGATGGTTATGGTGATGGTTATGGCTATGGTGATGAGAAGGAAGAGAAAAGCAGTGATGGAACTCATCAATTCCCTTTGAGGCCTGAAGCTGAAGATTGTTCATTTTATATGAAGACTGGGAGTTGCAAGTTTGGATTCAACTGCAAATTTAATCACCCCATTAGGAGGAAAAACCAAAACCAGGCTGTTAGGGAGAAGGTGCGAGAAAGAGAAGAACCAGAAGAGAACGCAGGCCAGACAGAATGCAAGTATTATCAAAGGTCTGGAGGTTGTAAGTTTGGAAAAGCTTGTAAGTACAACCACTCAAGAGGGTTCACAGCACCAATTTCAGAACTTAACTTTCTCGGCTTACCTATTCGTCTGGGAGAGAGAGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAGTTTGGATCGAACTGTAGGTTTAATCATCCTGATCCTACAACTGTCGGAGGATCTGATCCTCAATCAGGGTATGGTAATGGAGGGTCCGTTTCACTACGAGGTGTATCACAACAACCTGTCGCCTCATGGTCTTCAAGAAAGTTAAATGAAACACCTTTTGCTCCATTGATGCCTACGCCTACTCAAGGACTTGCTCCCCAAACTTCTGATTGGAATGGATATCAGGCACCTGCCTACTTATCAGAGAGGATCATGCATCCATCTTCTACTTATGTCATGAACAACCCAACAATTGACACAAATGTTTACATGCACCATCAAAAGCAGATGCCATTTGAAGTGTTTCCAGAAAGGCCTGGTGAACCTGAATGCAGTTTCTTCATTAAAACTGGGGATTGCAAGTTCAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGGTTGCAAAGTTGCCTCCTTGCAACCTTAGTGACAAGGGCCTGCCTTTGAGACCTGACCAGAGTGTCTGCTCGCACTATAGTCGTTATGGAATTTGCAAATTTGGGCCAGCTTGTAGATTTGACCACCCAGAAAGCGCACTTCCCCTAATGATGCCTGGACTCGGACAGCAATCCTTTGCAAACTCAGCTAATGCTCAGGTGGCTGGGATGGGTGGAAGTGCAAGTGATGCGACAATTCAACAATCTGTCTAA 1722 0.4344 MEHSEEIDLAATVSNAEEPQLGSEVQQSSPVDHHSPPSDLNQTVQKNDDELAVELHEKLDLKVEDEGVVETDDKVSNFNDGGVVSDERGSETEDKVLNFDDDERVGDERGAEIEDKVSNFDDGERVGDEESLKGEKVDEEESVKGENEEFVEGEERVDVDGDSKGWDTNSWNENVNEELGGGRDADDWGYGVGNGGGAGYGYGAGYGDGYGDGYGYGDEKEEKSSDGTHQFPLRPEAEDCSFYMKTGSCKFGFNCKFNHPIRRKNQNQAVREKVREREEPEENAGQTECKYYQRSGGCKFGKACKYNHSRGFTAPISELNFLGLPIRLGERECPYYMRTGSCKFGSNCRFNHPDPTTVGGSDPQSGYGNGGSVSLRGVSQQPVASWSSRKLNETPFAPLMPTPTQGLAPQTSDWNGYQAPAYLSERIMHPSSTYVMNNPTIDTNVYMHHQKQMPFEVFPERPGEPECSFFIKTGDCKFKSNCKFHHPKNRVAKLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACRFDHPESALPLMMPGLGQQSFANSANAQVAGMGGSASDATIQQSV* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3732 573 MobiDBLite consensus disorder prediction 266 285 - -
Mtr4g3732 573 MobiDBLite consensus disorder prediction 121 143 - -
Mtr4g3732 573 ProSiteProfiles Zinc finger C3H1-type profile. 461 489 IPR000571 GO:0046872
Mtr4g3732 573 ProSiteProfiles Zinc finger C3H1-type profile. 327 355 IPR000571 GO:0046872
Mtr4g3732 573 SUPERFAMILY CCCH zinc finger 465 490 IPR036855 GO:0046872
Mtr4g3732 573 SMART c3hfinal6 283 310 IPR000571 GO:0046872
Mtr4g3732 573 SMART c3hfinal6 234 261 IPR000571 GO:0046872
Mtr4g3732 573 SMART c3hfinal6 327 354 IPR000571 GO:0046872
Mtr4g3732 573 SMART c3hfinal6 461 488 IPR000571 GO:0046872
Mtr4g3732 573 SMART c3hfinal6 507 534 IPR000571 GO:0046872
Mtr4g3732 573 MobiDBLite consensus disorder prediction 16 48 - -
Mtr4g3732 573 MobiDBLite consensus disorder prediction 266 286 - -
Mtr4g3732 573 SUPERFAMILY CCCH zinc finger 508 537 IPR036855 GO:0046872
Mtr4g3732 573 PANTHER PROTEIN PHOSPHATASE RELATED 5 573 - -
Mtr4g3732 573 Gene3D - 458 537 - -
Mtr4g3732 573 MobiDBLite consensus disorder prediction 72 93 - -
Mtr4g3732 573 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 329 353 IPR000571 GO:0046872
Mtr4g3732 573 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 238 260 IPR000571 GO:0046872
Mtr4g3732 573 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 509 534 IPR000571 GO:0046872
Mtr4g3732 573 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 463 488 IPR000571 GO:0046872
Mtr4g3732 573 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 286 310 IPR000571 GO:0046872
Mtr4g3732 573 ProSiteProfiles Zinc finger C3H1-type profile. 283 311 IPR000571 GO:0046872
Mtr4g3732 573 MobiDBLite consensus disorder prediction 355 374 - -
Mtr4g3732 573 ProSiteProfiles Zinc finger C3H1-type profile. 507 535 IPR000571 GO:0046872
Mtr4g3732 573 Gene3D - 215 272 - -
Mtr4g3732 573 SUPERFAMILY CCCH zinc finger 287 310 IPR036855 GO:0046872
Mtr4g3732 573 Gene3D - 277 362 - -
Mtr4g3732 573 ProSiteProfiles Zinc finger C3H1-type profile. 234 262 IPR000571 GO:0046872
Mtr4g3732 573 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 5 573 - -
Mtr4g3732 573 SUPERFAMILY CCCH zinc finger 235 262 IPR036855 GO:0046872
Mtr4g3732 573 SUPERFAMILY CCCH zinc finger 328 354 IPR036855 GO:0046872
Mtr4g3732 573 MobiDBLite consensus disorder prediction 1 49 - -
Mtr4g3732 573 MobiDBLite consensus disorder prediction 121 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3732 Mtr-Chr4 51045200 51049282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3732 458 558 C2H2 Transcription Factor Family AT3G02830 43.137 6.29e-22 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr4g3732 zf-CCCH 2e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3732 4 51045200 51049282 Mtr3g2382 3 37694004 37698095 ECH
Mtr4g3732 4 51045200 51049282 Mtr4g3732 4 51045200 51049282 ECH
Mtr4g3732 4 51045200 51049282 Mtr3g2382 3 37694004 37698095 PCT