Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3673 ATGGCTTCTTCATCATCTTCTTCTTCCAAAAGACACCCAACATACCACGGAATTAGGAGCCGAGGAGGAAAATGGGTGACTGAAATCCGCGAGCCTCGTAAGACCAACCGCATATGGCTAGGCACATTCCCTACCCCTGAGATGGCAGCCGCGGCTTATGATGTCGCGACTTTGGCCCTCAAAGGCGGGGATGCTGTTCTAAACTTCCCTAATTCAGCTAGCAAGTACCCGGTGCCTGCGTCTAATTCACCAGATGATATCCGCAGTGCTGCCACAGCTGCAGCTGAGTTAACGGCGGCTGAAGCCGTTAATAATGATGCTGGCTTAAATGGTAGGCCTTGGTATGAAACTGAGTTTCTTGATGAAGAAGCTATATTCTCAATGCCAAGATTGATGGTAGAAATGGCTGAGGGTATGTTGCTTTCTCCTCCCAGAATGAATCCACCACCGTCTGAGTACTTGCCTGAATACTACACTTCGGGAGAAAGTTTGTGGAGCTACTATTGA 507 0.4872 MASSSSSSSKRHPTYHGIRSRGGKWVTEIREPRKTNRIWLGTFPTPEMAAAAYDVATLALKGGDAVLNFPNSASKYPVPASNSPDDIRSAATAAAELTAAEAVNNDAGLNGRPWYETEFLDEEAIFSMPRLMVEMAEGMLLSPPRMNPPPSEYLPEYYTSGESLWSYY* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3673 168 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
Mtr4g3673 168 SMART rav1_2 14 76 IPR001471 GO:0003700|GO:0006355
Mtr4g3673 168 MobiDBLite consensus disorder prediction 1 20 - -
Mtr4g3673 168 ProSiteProfiles AP2/ERF domain profile. 14 70 IPR001471 GO:0003700|GO:0006355
Mtr4g3673 168 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Mtr4g3673 168 CDD AP2 15 72 IPR001471 GO:0003700|GO:0006355
Mtr4g3673 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 168 - -
Mtr4g3673 168 PANTHER ETHYLENE RESPONSE FACTOR 3 168 - -
Mtr4g3673 168 Pfam AP2 domain 16 62 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3673 Mtr-Chr4 50508766 50509836 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3673 9 167 AP2-EREBP Transcription Factor Family AT5G52020 54.023 3.58e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g3673 AP2 5.7e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3673 4 50508766 50509836 Mtr4g3673 4 50508766 50509836 ECH
Mtr4g3673 4 50508766 50509836 Mtr5g0326 5 3045953 3047020 PCT