Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3672 ATGAAATCATCACTTGATGAGTCTAGTTACGTAGAGAACAACTCTTCTTCATCAGAAATCTTGTTAGCATCAGAACAACCAAAGAAACGTGCGGGTCGACGAAAATTCAAGGAGACAAGACATCCAGTATACAGAGGAGTACGAAGAAGGAACAACAACAACAACAAGTGGGTTTGTGAAGTGCGTGTTCCTAACGACAAGTCCACGAGGATTTGGCTTGGAACATATCCAACACCTGAGATGGCAGCACGTGCACACGACGTTGCCGCACTGGCACTTCGCGGTAAATCAGCTTGTCTTAATTTTGCTGACTCTGCGTGGCGGTTAGCGTTGCCGGCGACGAACAATGCGAAGGAGATTAGGAAAATGGCGGCGGAGGCTGCTTTGGCATTTGCCGTAGTTGCGGACAGTAAGGAACAAACTATGATTAGTAATTGTGATGTTAATAGTGTTGGTGTTATGGAAGTTGATAATAAACCTTTGCAGGGACTGTGTGTGGAAGTTCCAGAGGAGGAAATGTTGCATGATTGGTTTAGGAGTATGGCTGATGAGCCATTACGATCTCCTATTACTCCATTTATAAGACATGGCAGGGATCAGTGGAATAATGTTGATATTGATCAGGTTGATGCTGAGGTCTCCTTGTGGAACTTTACCATCTAA 663 0.4449 MKSSLDESSYVENNSSSSEILLASEQPKKRAGRRKFKETRHPVYRGVRRRNNNNNKWVCEVRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLALPATNNAKEIRKMAAEAALAFAVVADSKEQTMISNCDVNSVGVMEVDNKPLQGLCVEVPEEEMLHDWFRSMADEPLRSPITPFIRHGRDQWNNVDIDQVDAEVSLWNFTI* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3672 220 Pfam AP2 domain 42 95 IPR001471 GO:0003700|GO:0006355
Mtr4g3672 220 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Mtr4g3672 220 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Mtr4g3672 220 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3 220 - -
Mtr4g3672 220 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 220 IPR045277 GO:0003700
Mtr4g3672 220 SMART rav1_2 43 109 IPR001471 GO:0003700|GO:0006355
Mtr4g3672 220 MobiDBLite consensus disorder prediction 1 37 - -
Mtr4g3672 220 Gene3D AP2/ERF domain 43 104 IPR036955 GO:0003700|GO:0006355
Mtr4g3672 220 CDD AP2 44 105 IPR001471 GO:0003700|GO:0006355
Mtr4g3672 220 MobiDBLite consensus disorder prediction 1 23 - -
Mtr4g3672 220 ProSiteProfiles AP2/ERF domain profile. 43 103 IPR001471 GO:0003700|GO:0006355
Mtr4g3672 220 SUPERFAMILY DNA-binding domain 43 105 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3672 Mtr-Chr4 50501461 50502344 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3672 13 218 AP2-EREBP Transcription Factor Family AT5G51990 51.659 2.56e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr4g3672 AP2 6.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3672 - - gmx:100779318 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3672 4 50501461 50502344 Mtr5g0327 5 3053585 3054545 PCT