Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3667 ATGGTGAGAGGAAAAACTCAAATGAAACGCATCGAAAATGAGTCAAACAGACAAGTAACTTTCTCAAAGAGAAGAAATGGACTGCTTAAAAAGGCCTTTGAACTTTCAGTGCTTTGTGATGCTGAAGTCGCACTCATCGTCTTCTCTACCACAGGGAAACTCTATGAGTTTTCTAGTTCAAGTATAAGCAAGACAGTGGAACGCTATCAAGGGAAAGTCAAGGAACTGGTTCTCAGCACCAAAGGAATCCAAGAAAATACACAGCATCTAAAGGAATGTGATATCGACACAACAAAGAAGTTGGAACACCTAGAACTTTCCAAAAGGAAGCTGTTGGGAGAAGAATTGGGTTCATGTGCTTTTGACGAATTACAACAGATTGAAAATCAACTTGAACGTAGCTTAAGCAAAATAAGGGCAAGAAAGAATCAATTGCTCAAGGAGCAAATTGAAAAGCTAAAAGACAAGGAAAGGTTACTTCTTGAAGAAAATAAACGCTTATGCAAGCAGTGTGGAATTGGACAAAATGATTGTTTAAATAAACAACAAGAAAGTGTGCATGACGAGGAGGTGGAGACAGAATTGTTCATAGGGCGACCAAAGAAAAGAATGAATTGA 618 0.3835 MVRGKTQMKRIENESNRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSTTGKLYEFSSSSISKTVERYQGKVKELVLSTKGIQENTQHLKECDIDTTKKLEHLELSKRKLLGEELGSCAFDELQQIENQLERSLSKIRARKNQLLKEQIEKLKDKERLLLEENKRLCKQCGIGQNDCLNKQQESVHDEEVETELFIGRPKKRMN* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3667 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mtr4g3667 205 Coils Coil 121 170 - -
Mtr4g3667 205 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Mtr4g3667 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr4g3667 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr4g3667 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr4g3667 205 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr4g3667 205 PANTHER MADS BOX PROTEIN 1 201 - -
Mtr4g3667 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr4g3667 205 CDD MADS_MEF2_like 3 70 IPR033896 GO:0000977|GO:0045944
Mtr4g3667 205 Pfam K-box region 89 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr4g3667 205 SUPERFAMILY SRF-like 3 73 IPR036879 GO:0003677|GO:0046983
Mtr4g3667 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr4g3667 205 PANTHER MADS-BOX PROTEIN SOC1 1 201 - -
Mtr4g3667 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3667 Mtr-Chr4 50447964 50455552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3667 1 203 MADS-box Gene Family AT4G22950 59.242 1.51e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr4g3667 K-box 1.9e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3667 - - mtr:MTR_4g102530 385.185
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3667 4 50447964 50455552 Mtr4g3667 4 50447964 50455552 ECH
Mtr4g3667 4 50447964 50455552 Mtr8g1082 8 13244488 13249330 ECH
Mtr4g3667 4 50447964 50455552 Mtr7g1905 7 35171949 35178667 ECH