Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3664 ATGGCTGCAATCTATCAATATTGTAGCTTGTTCATTACACTTACATTGATGCTCACAATCATTGGAAAGCCAGCTTTAGTAATGGGCACATTTCAACCCAGTCCATGGACTCTTGCACATGCCACATTTTATGGCGATGAGACAGCTTCTGCCACCATGGGAGGAGCATGTGGGTATGGGAATTTGTTTGTGAACGGTTATGGGACAGACACAGCAGCATTGAGTTCAACATTGTTCAATAATGGGTATGCATGTGGGACTTGTTATCAAATAAAATGTGTTCAATCGAGTGCATGTAACACCAATGTTCCTTACACTACAGTCACTGCCACAAATATTTGCCCTCCTAATTGGTCTCAGGCCTCTGATAACGGTGGATGGTGCAACCCACCACGTTCACATTTTGACATGTCTAAGCCTGCTTTCATGAAAATTGCTCAGTGGAAGGCTGGTATCGTCCCTGTTATGTATCGCAGAGTACCTTGCGTGAGAAGTGAAGGATTTCGATTCTCTTTCCAAGGAAATGGATATTGGTTATTGGTGTACGTGATGAATGTGGGAGGTGGAGGTGATATAGCAAACATGTGGGTTAAAGGAAGTAGAACAGGATGGATTAGCATGAGCCACAATTGGGGTGCTTCTTACCAAGCATTTGCAACACTTAGTGGCCAAACTCTTTCTTTCAAGATTACTTCTTACACAACCAAAGAAACTATAATAGCTTGGAATGTTGCTCCTTCCAACTGGGGTGCTGGACTAACCTATTCCACACATGTCAATTTTCATTGA 789 0.4271 MAAIYQYCSLFITLTLMLTIIGKPALVMGTFQPSPWTLAHATFYGDETASATMGGACGYGNLFVNGYGTDTAALSSTLFNNGYACGTCYQIKCVQSSACNTNVPYTTVTATNICPPNWSQASDNGGWCNPPRSHFDMSKPAFMKIAQWKAGIVPVMYRRVPCVRSEGFRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSRTGWISMSHNWGASYQAFATLSGQTLSFKITSYTTKETIIAWNVAPSNWGAGLTYSTHVNFH* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3664 262 PANTHER EXPANSIN 2 262 - -
Mtr4g3664 262 Gene3D - 23 162 IPR036908 -
Mtr4g3664 262 Pfam Expansin C-terminal domain 169 246 IPR007117 -
Mtr4g3664 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 167 IPR007112 -
Mtr4g3664 262 SUPERFAMILY PHL pollen allergen 166 256 IPR036749 -
Mtr4g3664 262 Gene3D - 167 262 IPR036749 -
Mtr4g3664 262 SMART dpbb_1 71 157 IPR007112 -
Mtr4g3664 262 PRINTS Expansin signature 66 80 IPR002963 GO:0009664
Mtr4g3664 262 PRINTS Expansin signature 106 116 IPR002963 GO:0009664
Mtr4g3664 262 PRINTS Expansin signature 125 142 IPR002963 GO:0009664
Mtr4g3664 262 PRINTS Expansin signature 142 155 IPR002963 GO:0009664
Mtr4g3664 262 PRINTS Expansin signature 166 178 IPR002963 GO:0009664
Mtr4g3664 262 PRINTS Expansin signature 178 199 IPR002963 GO:0009664
Mtr4g3664 262 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Mtr4g3664 262 SUPERFAMILY Barwin-like endoglucanases 35 185 IPR036908 -
Mtr4g3664 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Mtr4g3664 262 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Mtr4g3664 262 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Mtr4g3664 262 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576
Mtr4g3664 262 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Mtr4g3664 262 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Mtr4g3664 262 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Mtr4g3664 262 Pfam Lytic transglycolase 71 157 IPR009009 -
Mtr4g3664 262 PANTHER EXPANSIN-A15 2 262 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3664 Mtr-Chr4 50413841 50415877 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3664 1 262 Expansin Gene Family AT1G12560 63.740 1.11e-124 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3664 - - gmx:100781459 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3664 4 50413841 50415877 Mtr4g3664 4 50413841 50415877 ECH
Mtr4g3664 4 50413841 50415877 Mtr5g0342 5 3198967 3200580 PCT