Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3622 ATGTCGTCCTCTTCAACCACAACATTATCCTTGGACCACCTCCCTCCTTCCGAGCAACTTTGTTATGTCCACTGCACCATCTGTGACACCATCCTTGCTGTGAGTGTTCCTTGCACAAGCTTGTTCAAGACCGTGACTGTGAGATGCGGTCATTGCACTAATCTGCTTCCAGTCAACATGCGTGCATTACTTCTGCCATCCCCTAATCAGTTTCATTTGGGACACTCTTTCTTCTCCCCAACTCATCATAACCTTCTGGAGGAGATGCCAAACCCAGCTCCAAATTTTATGATGAACCATATAAATGCACCAAATGATTTCTCTATGCCTCCTACTAGGACTGTAGCTGATGAGCTTCCACGCCCACCAATCATAAACAGACAGAAAAGACAGAGAGTTCCCTCAGCATACAACCGATTCATCAAGGACGAGATCCAACGCATTAAGTCTGTCAATCCTGATATAACCCACAGGGAAGCCTTCAGCGCAGCTGCCAAGAATTGGGCCCACTTCCCACACATTCACTTTGGTCTCATGCCTGATCAGACTATGAAGAAGACAAATGTGTGCCAGCAGGAAGGAGATGATCAGATTCTGATGAAAGATGGGGGATTTTATGCTTCAGCAAATCTTGGTGTTTCGCCCTACTAA 651 0.4624 MSSSSTTTLSLDHLPPSEQLCYVHCTICDTILAVSVPCTSLFKTVTVRCGHCTNLLPVNMRALLLPSPNQFHLGHSFFSPTHHNLLEEMPNPAPNFMMNHINAPNDFSMPPTRTVADELPRPPIINRQKRQRVPSAYNRFIKDEIQRIKSVNPDITHREAFSAAAKNWAHFPHIHFGLMPDQTMKKTNVCQQEGDDQILMKDGGFYASANLGVSPY* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3622 216 PANTHER PROTEIN YABBY 6-RELATED 1 214 IPR006780 GO:0007275
Mtr4g3622 216 Pfam YABBY protein 16 178 IPR006780 GO:0007275
Mtr4g3622 216 SUPERFAMILY HMG-box 123 171 IPR036910 -
Mtr4g3622 216 PANTHER PROTEIN YABBY 4 1 214 - -
Mtr4g3622 216 Gene3D High mobility group box domain 125 175 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3622 Mtr-Chr4 49971381 49974871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3622 27 214 C2C2-YABBY Transcription Factor Family AT4G00180 55.981 3.50e-64 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Mtr4g3622 YABBY 2.2e-65 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3622 K25796 - gmx:100798441 368.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g3622 4 49971381 49974871 Mtr4g3622 4 49971381 49974871 ECH