Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g3604 ATGTTTCCTCTTTTTCTGAAGAATCTCTCCTTTCTCCCTTCTTGTCTTTCTCGCAAGGTTTTTACCAGAATTCAAGTGGGTCAGTTCTCATCATCTTCTTCTTTTCCTGAGGTTTCAGTATGGTGGCACCTTGACAGCTGTGTCGTGCCTTCTGGGATTAGCTATTCGAAGGTAGCACCTTCAACTACGGTTGCCCTTAGAGCGAACGGGATTATGGGTAATACTTATGGCGATTTTAATTCTTCTGAGGTCGACAAAGAGGCTCTTAATTCAACCAACTTTTCTCTACACGGATCCATTACCGATTCCTCTTCTGTCAAACATAAATTAAATACCGTTGGAAAGAACAATAGGTATAAGCATTTTCTTATGGATCTTAATGATTGGGTTTCCGCAAATCCTCCACCCGTACACCTCTTTTTGATATTTGCTAGTGAAGAATTCTCTAGTAGTGGCATATTGCACCGGTTAAGAATGTGCAACTACAATATCTTGCTTGCATGTCCAGGAATGCCTCATGTTGCTCTTTGCCATGCACCAACTATAATGTGGGACTAG 558 0.414 MFPLFLKNLSFLPSCLSRKVFTRIQVGQFSSSSSFPEVSVWWHLDSCVVPSGISYSKVAPSTTVALRANGIMGNTYGDFNSSEVDKEALNSTNFSLHGSITDSSSVKHKLNTVGKNNRYKHFLMDLNDWVSANPPPVHLFLIFASEEFSSSGILHRLRMCNYNILLACPGMPHVALCHAPTIMWD* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g3604 185 CDD PIN_limkain_b1_N_like 38 169 - -
Mtr4g3604 185 Pfam NYN domain 38 178 IPR021139 GO:0004540
Mtr4g3604 185 PANTHER EMB|CAB71880.1 12 185 - -
Mtr4g3604 185 PANTHER LIMKAIN B LKAP 12 185 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g3604 Mtr-Chr4 49726259 49727210 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g3604 37 184 C2H2 Transcription Factor Family AT5G61190 32.051 1.85e-14 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g3604 - - mtr:MTR_4g101170 337.035